Phytoplankton taxonomic abundance in water bodies

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  • The Iodide in the ocean project brings together marine and atmospheric scientists in order to address uncertainties in the marine iodine flux and associated ozone sink. Specifically, it aims to quantify the dominant controls on the sea surface iodide distribution and improve parameterisation of the sea-to-air iodine flux and of ozone deposition. It contains data from a combination of laboratory experiments, field measurements and ocean and atmospheric modelling from three cruises as well as worldwide sea surface measurements from 1967-2018 from published manuscripts, published and unpublished data supplied by the originators themselves or provided by repositories. Iodide, iodate and total iodine concentrations were measured on three cruises: BOBBLE, June to July 2016 in the Bay of Bengal, Sagar-Kanya33 in September 2016 in the Arabian Sea and ISOE9 in January to February 2017 in the Indian and Southern Oceans. Samples were taken from Niskin bottles on conductivity-temperature-depth (CTD) profilers. Laboratory experiments consisted of phytoplankton cultures to measure rates of iodate incorporation and iodide production. This work was carried out by Lucy Carpenter (PI), Claire Hughes (Co-PI) , Liselotte Tinel, and Helmke Hepach at York University, Mark Evans (Co-PI) at the University of Edinburgh. It was funded by the NERC Discovery Science project Iodide in the ocean: distribution and impact on iodine flux and ozone loss (parent grant reference NE/N009983/1 with child grants NE/N009444/1 and NE/N01054X/1 led by Stephen Ball and David Stevens respectively).

  • This dataset contains CTD, chlorophyll, and phytoplankton abundance and biomass data gathered through analysis of discrete water samples collected from multiple sailings of the RV Callista. The data were collected offshore of Falmouth, UK to explore the seasonally stratified waters of the Western English Channel in June and July 2013. Discrete water samples were taken with CTD profiles to examine the phytoplankton communities of subsurface chlorophyll maxima. Phytoplankton taxa/groups were identified, counted, and converted to a measure of biomass to analyse phyotplankton communities to determine if subsurface chlorophyll maximum thin layers (<5m thick) have a distinct phytoplankton community structure to that of broader maxima. The data were collected by Michelle Barnett as part of her PhD study funded by the Graduate School of the National Oceanography Centre, Southampton.

  • This data set comprises hydrographic measurements including temperature, salinity, fluorescence, attenuance, dissolved oxygen concentrations and current velocities. Water samples were also collected for salinity and geochemical analysis, and the data set also includes bathymetric, sediment and upper ocean turbulence measurements. The data were collected over six Science Missions at the Strait of Sicily, West Coast of Scotland (Loch Etive and Loch Fyne), North-East Scotland and Shetland Islands, North Weddell Sea, Isles of Scilly, Southern North Sea (Norfolk Bank) over the period 19 April 1999 – 25 May 2001. The data were collected by both shipboard sensors and those attached to the Autosub (Autonomous Underwater Vehicle) package. Shipboard data collection included deployment of a conductivity-temperature-depth (CTD) package with attached auxiliary sensors. Lowered acoustic Dopper current profilers (LADCPs) were also attached to the CTD frame, while discrete water samples were collected from the CTD stations. Oceanographic, bathymetric and sediment data were collected along the ship’s track. Autosub measurements included standard environmental parameters and acoustic instruments were used to measure ocean bottom relief at high resolution. A camera was also attached to the vehicle, permitting the collection of detailed photographs of the seabed. The broad aims of the Autosub Programme are the collection of interdisciplinary data sets that cannot be obtained by research ships, and demonstration to the scientific and wider user community of the usefulness of an AUV. Investigators: David A Smeed, Kate Stansfield, Julian Overnell, Kenny D Black, Peter Statham, Chris German, Andrew S. Brierley, Paul G. Fernandes, Mark A. Brandon, Alex Cunningham, Peter Burkill, Glen Tarran, Prof. Mike Collins, Dr George Voulgaris, Dr John Trowbridge, Dr Eugene Terray, Steve A Thorpe and Thomas Osborn. The British Oceanographic Data Centre holds the Autosub navigation files, CTD and ADCP data for each of the missions listed above. The data are contained as high resolution time series. The data are presently being processed and have not been fully quality controlled. The Autosub science missions brought together researchers and engineers from a number of UK institutions, with the project being coordinated by the National Oceanography Centre, Southampton.

  • The data set comprises hydrographic and biogeochemical and biological measurements including temperature, salinity, currents, chlorophyll, dissolved organic and inorganic carbon and nitrogen, suspended matter concentrations, nutrients, plankton and fish. The results of primary production experiments are also included. The data were collected from the Bristol Channel, Severn Estuary, Celtic Sea and Plymouth Sound between 1971 and 1983. Measurements were taken over a series of more than 100 cruises, many with more than 50 stations. The most intensive sampling took place before 1975. The original data were collated and stored at Institute for Marine Environmental Research (IMER), which became Plymouth Marine Laboratory in 1988. As this is a large and important data set, which was previously held in an inaccessible format, it was selected for long-term archival at BODC as part of the NERC SEEDCORN programme. The data have been extracted, loaded into a relational database and are available on CD-ROM.

  • The Shelf Sea Biogeochemistry (SSB) data set comprises hydrographic data, including measurements of temperature, salinity and currents, complemented by bathymetric and meteorological data. The study area is located in the Celtic Sea, shelf seas and shelf-edges around the United Kingdom and Republic of Ireland. The data were collected by a combination of research cruises that spanned from March 2014 to September 2015. Shipboard data collection involved the deployment of conductivity-temperature-depth (CTD) packages in the study area. Continuous measurements of current velocities (using vessel mounted ADCPs, VMADCPs), bathymetry and surface ocean and meteorological properties were collected throughout each cruise. Moorings were deployed in the Celtic Sea in early 2014 and provided approximately two years worth of hydrographic time series data. The SSB programme aims to increase the understanding of the cycling of nutrients and carbon and the controls on primary and secondary production, and their role in wider biogeochemical cycles, which in turn will significantly improve predictive marine biogeochemical and ecosystem models over a range of scales. SSB brings together UK researchers from Bangor University, Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Meteorological Office, National Oceanography Centre (NOC), Plymouth Marine Laboratory (PML), Scottish Association for Marine Science (SAMS), University of Aberdeen, University of East Anglia (UEA), University of Edinburgh, University of Liverpool, University of Oxford, University of Portsmouth and University of Southampton. It also has UK and Irish partners, as Agri-Food and Biosciences Institute (AFBI), Marine Institute and Marine Scotland Science. The programme was divided into five work packages, having Jonathan Sharples as the Principal Investigator for work package 1 (CANDYFLOSS), Martin Solan as Principal Investigator for work package 2 (Biogeochemistry, macronutrient and carbon cycling in the benthic layer), Peter J. Statham as Principal Investigator for work package 3 (Supply of iron from shelf sediments to the ocean), Icarus Allen as Principal Investigator for work package 4 (Integrative Modelling for Shelf Seas Biogeochemistry) and Keith Weston as Principal Investigator for work package 5 (Blue Carbon – How much carbon is stored in UK shelf seas, what influences storage and could it be used in carbon trading?). All data will be managed by the British Oceanographic Data Centre (BODC).

  • The dataset contains physical, biological and chemical oceanographic measurements, and meteorological data. Hydrographic measurements include temperature, salinity, attenuance and backscatter, pH and dissolved oxygen concentrations, while water samples were analysed for concentrations of carbon, nitrogen, hydrocarbons, nutrients and pigments. Samples were also collected for phytoplankton and zooplankton analyses, while results from production experiments are also included in the data set. These oceanographic data are supplemented by surface meteorological measurements. Measurements were taken at sites in the Bellinghausen Sea as part of a 2-ship Eulerian experiment between the 28th of October and the 17th of December 1992. The data were collected via (i) underway sampling (SeaSoar Undulating Oceanographic Recorder (UOR), lightfish, hull-mounted acoustic Doppler current profiler (ADCP), meteorology and surface ocean parameters) of which there are 121179 records and (ii) discrete sampling (conductivity-temperature-depth (CTD) and expendable bathythermograph (XBT) casts, bottle stations, net hauls, productivity incubations) of which there are over 1000 deployments and experiments. The study aimed to measure the magnitude and variability of carbon and nitrogen fluxes during early summer in the Southern Ocean, with particular emphasis on rates and processes in the marginal ice zone. The data were collected and supplied by UK participants in the Joint Global Ocean Flux Study (JGOFS). The British Oceanographic Data Centre (BODC) are responsible for calibrating, processing, quality controlling and documenting the data and assembling the final data set. Underway data are stored as 1 minute interval time series for each cruise with all parameters merged on date/time. The data are fully quality controlled; checks were made for instrument malfunction, fouling, constancy, spikes, spurious values, calibration errors, baseline and salt-water corrections. The discrete data are stored in a relational database (Oracle RDBMS), chiefly as vertical profiles and are uniquely identified by a combination of deployment number and depth.

  • The dataset contains hydrographic and biogeochemical data, including continuous underway measurements of surface temperature, salinity, nutrients, chlorophyll and attenuance, irradiance and bathymetric depth. Underway dissolved oxygen and/or trace metal measurements were also collected on occasion. Hydrographic profiles of temperature, salinity, transmittance, fluorescence, dissolved oxygen (data often of poor quality) and scalar irradiance were undertaken, and associated water samples were routinely analysed for suspended particulate material (SPM), chlorophyll, nutrients and particulate organic carbon/particulate organic nitrogen (POC/PON). In addition, dissolved and particulate trace metals, production, contaminants, dissolved organic carbon/total dissolved nitrogen (DOC/TDN) were determined in some cases. Benthic measurements were also collected, including benthic flux determinations (microcosm experiments), sediment characterisation, pore water chemistry measurements and the quantification of the benthic macrofauna. The coastal oceanographic data set was collected along the east coast of England between Great Yarmouth and Berwick upon Tweed. Data were collected between December 1992 and July 1995 during a series of 17 RRS Challenger cruise legs. Most cruises covered two survey grids: one from Great Yarmouth to the Humber designed around the distribution of the sandbanks and a second simple zig-zag grid from the Humber to Berwick on Tweed. A large number of anchor stations, usually over one or two tidal cycles, were worked in the vicinity of the Humber mouth or the Holderness coast. Each cruise leg returned underway data and conductivity-temperature-depth (CTD) data and water bottle rosette samples from grid nodes. A Lasentech in-situ particle sizer was used to obtain grain size distributions at spot depths for each CTD station on many of the cruise legs. Box and multicorer samples were collected on approximately one third of the cruise legs. The River-Atmosphere-Coast Study (RACS) was the component of the Land Ocean Interaction Study (LOIS) programme looking at processes from the river catchment into the coastal sea. Investigators include representatives of Plymouth University, Southampton University, Liverpool University, University of East Anglia, Newcastle University, Plymouth Marine Laboratory, and the University of Wales, Bangor. All data sets collected during the RACS Challenger cruises are held by the British Oceanographic Data Centre (BODC). All underway and CTD data have been fully calibrated and quality controlled by BODC. The water sample and benthic data sets have been quality controlled by the data originators and submitted to BODC. The data are held in the BODC project database and have been published as part of a fully documented CD-ROM product.

  • This cross-disciplinary project resulted in a diverse data catalogue. This includes meteorology (2-D wind speed and direction, total irradiance, Photosynthetically Active Radiation/PAR, air temperature, atmospheric pressure, humidity); atmospheric composition (chemical analyses of aerosol particle composition) and biological, chemical and physical properties and processes in the photic zone (optical properties of the water column; chlorophyll concentration; photosynthetic pigment composition; primary production; bacterial production; phytoplankton and bacterial speciation; concentrations of biogenic trace compounds such as iodocarbons, methyl bromide, dimethyl sulphide/DMS and dimethyl sulphoniopropionate/DMSP; trace gas production; plankton community composition; nutrient concentration; concentrations of trace metals such as iron; salinity; temperature; Dissolved Organic Matter - particulate carbon, nitrogen and phosphorus; phytoplankton growth rates, grazing mortality and viral lysis; ammonium regeneration, nitrification and nitrogen fixation; gross production, net community production and dark community respiration; zooplankton ecology). The fieldwork included two dedicated research cruises in the eastern North Atlantic Ocean, spanning the period April - May 2004. Measurements of nutrient cycling and biological activity were monitored prior to and after deployment (IN stations) of patches fertilised with iron and phosphate relative to several (OUT stations) controls. Measurements were taken using a variety of instrumentation, including conductivity-temperature-depth (CTD) profilers with attached auxiliary sensors and acoustic Doppler current profilers (ADCPs), while incubation chambers were used for shipboard experiments. Samples were collected with Niskin bottles attached to the CTD frame at different depths in the water column and samples analysed onboard or preserved for analysis back in the laboratory. The FeeP data set was intended to advance understanding of how the supply and mutual interactions between iron and phosphate control biological activity and fluxes in the subtropical North Atlantic. The study led by the Plymouth Marine Laboratory (PML) united marine scientists from institutions across the UK and international collaborators. It was funded by the UK Natural Environment Research Council. The data are held at the British Oceanographic Data Centre (BODC) and have been incorporated into the National Oceanographic Database (NODB).

  • The data set comprises hydrographic, biogeochemical and biological data, including measurements of temperature, salinity and attenuance, plus concentrations of parameters such as nutrients, pigments, urea, hydrocarbons, sedimentation flux, sulphur and dissolved carbon. Analyses of bacterial, zooplankton and phytoplankton communities were also undertaken. The oceanographic data were supplemented by measurements of surface meteorological parameters. Data were collected across three repeated sections: one along the Gulf of Oman; a section at 67deg East from 8 to 14.5deg North; and a major section from 8deg North, 67 deg East to the coast of Oman. Other one-off sections were also traversed in the Arabian Sea and Gulf of Oman areas. Measurements were collected during two cruises: one between 27 August and the 4 October 1994 and the other between the 16 November and the 19 December 1994. Sections were covered by underway surface ocean measurements (one minute sampling of multiple parameters providing some 5 million measurements) complemented by a total of 21 CTD/water-bottle stations, 14 of which were repeated. ARABESQUE was organised by the Plymouth Marine Laboratory of NERC's Centre for Coastal and Marine Sciences and involved the University of Wales, Bangor; Queen's University of Belfast; University of East Anglia; University of Edinburgh; University of Newcastle; the Bedford Institute of Oceanography, Canada; the Max Planck Institute for Limnology, Germany and the Sultan Qaboos University, Oman. Data management support for the project was provided by the British Oceanographic Data Centre. All data collected as part of the project were lodged with BODC who had responsibility for assembling, calibrating, quality controlling and fully documenting the data. BODC checked for instrument spikes or malfunction, values beyond the calibration range, unreasonable ratios of chemical constituents and unreasonable deviations from climatological means. Data were assembled into a relational database, complete with supporting documentation and a user manual. The full data set has been published by BODC on CD-ROM complete with user interface.

  • The dataset comprises a diverse set of physical, chemical and biological data including: bacteria, carbon, chlorophyll, dissolved gases, light levels, nutrients, phytoplankton, productivity, respiration, salinity, temperature, trace elements and zooplankton. Measurements were gathered from the North Atlantic and Norwegian fjord waters between 1971 and 1998. The data arise from three sources: biological and hydrographic data collected between 1971 and 1975 at Ocean Weather Ship (OWS) India in the North Atlantic; conductivity-temperature-depth (CTD) casts, water samples, net samples and meteorological data from the four week Bergen Mesocosm experiment at Espegrend Marine Biological Field Station (Norway) in 1995; and the six week RRS Discovery cruise 221 to the North East Atlantic in 1996, where physical, chemical and biological data were collected. The data were collected using a variety of methods including: more than 500 CTD and SeaSoar profiles; nearly 1000 water bottle samples; over 600 net hauls; over 450 Secchi disk deployments; nearly 4000 multisizer samples; 23 production experiments; four drifting buoy tracks and 40 days of weather observations. The PRIME programme aimed to lay the basis for mathematical models to describe the role of plankton in biogeochemical fluxes within the oceans which have implications for climate regulation. The project was hosted by the School of Ocean Sciences, University of Wales, Bangor. Data management was undertaken by the British Oceanographic Data Centre and over 95% of the data collected are now assembled on a CD-ROM. The data are accompanied by an extensive users' guide (covering sampling protocol documentation), the structures used to store the data, and the data interrogation tools.