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Biota

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  • This dataset reports results on seedling growth and survival for two hyphal exclusion experiments in a subtropical forest. The data include survival status, height, total biomass and the biomass of component plant parts, percentage root colonisation by mycorrhizas, for tree seedlings of ten common species including five ectomycorrhizal (ECM) and five arbuscular mycorrhizal (AM) species, which were transplanted in the in-growth cores with windows covering different sizes of nylon meshes (35 vs. 0.5 µm). The dataset provides raw data on growth and survival metrics for each seedling, plus identifying codes for the dominant sites where the experiments were conducted, as well as experimental block, mesh treatment, botanical names for the tree species, and mycorrhizal type. The data were entered into Excel spreadsheets and exported as comma separated value files (csv). Study area - the Heishiding Nature Reserve (111°53’E, 23°27’N, 150-927 m a.s.l.) in Guangdong Province of south China. Full details about this dataset can be found at https://doi.org/10.5285/f1d17e61-bb6c-47a9-a648-062c63ea7f16

  • This dataset consists of structure, biomass (carbon density) and biodiversity (plant species richness) from forest inventory plots at forest restoration sites in South and Southeast Asia and the code for the analyses of these data as conducted in Banin, Raine et al (2023). The recorded data consists of plot level censuses carried out up to May 2021 collated from published studies, grey literature and data provided by co-authors. This represents the collation of data from 11 sites in areas where disturbance had led to the clearance or degradation of natural forest. Plots where tree seedlings were planted (active restoration) and plots where no seedling planting took place (natural regeneration) were censused for structure, biomass and/or biodiversity. Some of the sites in the dataset also recorded data at old growth forest plots for reference, and/or provided repeat measures of forest metrics over time. The dataset also includes the code used for analysis of this plot level data, used to compare the outcome of different restoration approaches. Full details about this dataset can be found at https://doi.org/10.5285/3d3b1d09-9e7a-4144-b8a1-b09a3c573466

  • These data consist of relative telomere length (RTL) measures from quantitative polymerase chain reaction, of Seychelles warbler birds on Cousin Island, Seychelles. The data were collected by the Seychelles Warbler Project in 1995-2014. Data include bird identity, sex, age, birth period, qPCR plate identity, RTL, technician, territory, field period, mum ID, dad ID, mum age at conception, dad age at conception, dominant female ID in the natal territory, dominant male ID in the natal territory Full details about this dataset can be found at https://doi.org/10.5285/8a8240a2-e8ed-495d-ae93-c35200956764

  • This dataset contains morphological data from the isopod crustacean, Asellus aquaticus collected from Chernobyl affected areas of Belarus and Ukraine in 2015. This data was collected to calculate fluctuating asymmetry, a measure of developmental stability, in organisms along a gradient of radiation contamination. Five different morphological characters were measured and fluctuating asymmetry (right side minus left side) was calculated. Fluctuating asymmetry was calculated here as FA2: [|R-L|/(R+L)/2)] where R and L represent measurements in micrometres for right and left sides of the five morphological characters. Number of segments represents raw right minus left data for the number of antennal segments and is thus provided in a separate column. All data provided are means of two independent measurements. In addition, a measure of environmental factors and total dose rates are also provided in this dataset. Blank cells indicate where no data was available. Full details about this dataset can be found at https://doi.org/10.5285/47f036c4-e319-4825-9cb8-f27977eb20dd

  • The data comprise high resolution climate measurements including temperature, precipitation, relative humidity, wind gust speed, wind direction and dew point measured in an open space in proximity to a forest fragment close to Sirsi, Western Ghats, India in 2021 and 2022. The data provide background information used to determine the safety margins of Indian tropical forests to elevated temperatures and dry conditions. Please see related data for information on leaf temperature, soil moisture, and growth, hydraulic, thermal and photosynthetic traits for a representative set of plant species. Full details about this dataset can be found at https://doi.org/10.5285/d7b0dc22-053d-4a91-8e90-2f8b2ab794e4

  • This dataset contains tree species and associated measurements from an initial survey of 8 x 1 ha Permanent Sample Plots (PSP) and 2 x 1 ha biomass measurement plots established on the Eastern Plateau of Gorongosa National Park, Sofala, Mozambique, with intention of assessing the long-term impacts of tropical cyclone damage on woodland structure. Methodology used was in accordance with specifications of the Socio Ecological Observatory for Southern African Woodlands (SEOSAW) plot protocol. PSPs were established between 1st August 2019 to 1st October 2019. PSP establishment was undertaken by University of Edinburgh in collaboration with Eduardo Mondlane University and the Mozambique Institute of Agricultural Research (IIAM) with assistance of Gorongosa National Park Scientific Services Department. Full details about this dataset can be found at https://doi.org/10.5285/8ecabd05-9ad6-4e4a-861c-dd767aba57a0

  • This dataset includes measurements of stem respiration in 20 plots (250 x 10 m each) in the Brazilian Amazon. Study plots were distributed across a gradient of forest disturbance, including: undisturbed primary forests , logged primary forests, logged-and-burned primary forests, and secondary forests. Data were collected from June 2015 until July 2018. In December 2015, during the El Niño-mediated drought, eight of our study plots were affected by understory fires. Full details about this dataset can be found at https://doi.org/10.5285/4826f7c3-d6f2-47e5-8dda-c084e54720f6

  • Data comprise plot details and radionuclide activity concentrations for Sr-90, Cs-137, Am-241, Pu-238, Pu-239 and Pu-240 in ‘grassy’ vegetation and soil. These radionuclide activity concentrations have been used to make estimations of total weighted absorbed doses to grassy vegetation, deciduous trees and bacteria; no dose rate estimates for grassy vegetation have been made for those sites where grassy vegetation was absent. Radiation from the 1986 Chernobyl nuclear power plant accident killed coniferous trees in a 4-6 km2 area of forest to the west of the power plant. This area is now known as the 'Red Forest’ and it has subsequently regenerated with understorey vegetation and deciduous trees; it is the most anthropogenically contaminated radioactive ecosystem on Earth. In July 2016 a severe fire burnt (to varying degrees) c. 80 percent of the Red Forest; this presented a unique opportunity to study the impact of radiation on the recovery of forest ecosystems exposed to a secondary stressor (fire). To investigate this, in September 2017 the RED FIRE project set up sixty study plots in the Red Forest (in burnt and unburnt areas) with a further nine plots established close to Buriakivka village (approximately 8 km from the Red Forest). Vegetation samples from each plot were harvested using shears in September 2017. Each sample was sorted into ‘grassy’ and ‘other’ vegetation; these were air-dried (20-25 degrees Celsius) and the grassy vegetation samples homogenised prior to radionuclide analyses. Soil core samples collected in September 2017 were bulked, homogenised and sub-samples taken for determination of pH and percentage moisture determined by oven drying (approximately 60 degrees Celsius) to a constant mass. The remaining soil sample was used for the determination of radionuclide activity concentrations; prior to analyses, these samples were dried at approximately 80 degrees Celsius. This work was funded by the NERC, Grant Ref: NE/P015212/1 (RED FIRE: Radioactive Environment Damaged by fire: a Forest In Recovery) Full details about this dataset can be found at https://doi.org/10.5285/60782622-7bfa-4615-a9e3-0a802a9f4674

  • The resource contains experimental data collected at the Institute of Ecology and Evolution, University of Edinburgh between Jan-Oct 2023. Sixty (60) lines from the Drosophila Genetic Reference Panel (DGRP) were exposed to an orally acquired infection of the bacterial pathogen Pseudomonas aeruginosa. Six to ten replicate flies for each line (60) and sex (2) were exposed. Total number of activity events were measured for each fly individually using Drosophila Activity Monitor (DAM), measured at 1 min resolution until death. Mortality was recorded as the last detected movement in DAM. Pathogen shedding was measured for each individual fly as the number of viable P. aeruginosa colony-forming units defecated by an infected fly for 24h following oral infection. Full details about this nonGeographicDataset can be found at https://doi.org/10.5285/65c7085a-7bcf-481a-884a-8e1c9cfc395b

  • Data are presented showing litterfall ant species and abundance from a plot based fertilisation experiment. The experiment was carried out at the Biological Dynamics of Forest Fragments Project (BDFFP) approximately 100 km north of Manaus. Data were collected in October 2018 and September 2019 by Santos-Neto. Sampling was carried out using a Wrinkler extractor. The data were collected to investigate the possible effects of different fertiliser applications on litterfall ant species and abundance. The work was carried out as part of the Amazon Fertilization Experiment (AFEX), funded by the Natural Environment Research Council (NERC), Award reference NE/L007223/1, by the Brazilian government (Researcher scholarship) and the Biological Dynamics of Forest Fragments Project (BDFFP - logistical support and camps maintenance). Full details about this dataset can be found at https://doi.org/10.5285/60e77fd4-7a24-4545-8d90-08e9dfcbd16a