Operational taxonomic units for epilithon eukaryotes in the rivers Wolf and Tamar catchments
This datset contains operational taxonomic units for epilithon eukaryotes (water samples): Approximate location of sampling sites was determined from maps to provide good spatial coverage of the Wold River through to the Tamar River. Exact sites were determined in the field, considering accessibility and other logistics. The exact location of each sample site was determined using a Garmin GPS12. Three stones were taken from each of the 20 locations and epilithon removed from a defined area. Samples were kept in the cold and removed to the laboratory for analyses. DNA was extracted from all soil and epilithon samples using the MOBIO Powersoil 96 well DNA extraction kit. DNA was quality checked for purity and yield prior to submission for 454 pyrosequencing to assess both bacterial and eukaryotic biodiversity within each sample. Following bioinformatic sequence processing, sequencing were clustered into operational taxonomic units (OTU) and the data tables display the percentage of each OTU within each sample. Full details about this dataset can be found at https://doi.org/10.5285/18023db5-25d8-44f7-b291-61869f937367
INSPIRE
Identification
- File identifier
- 18023db5-25d8-44f7-b291-61869f937367 XML
- Resource type
- dataset
Online resource
Resource identifier
- Metadata Language
- English (en)
- Spatial representation type
- textTable
Encoding
- Format
- Comma-separated values (CSV)
Projection
Classification of data and services
- Topic category
-
- Biota
- Environment
- Inland waters
- Location
Classification of data and services
Coupled resource
Coupled resource
Classification of data and services
Coupled resource
Coupled resource
Keywords
- GEMET - INSPIRE themes, version 1.0 ()
-
- Land Use
Geographic coverage
N
S
E
W
Temporal reference
Temporal extent
Temporal extent
- Dataset Reference Date ()
- 2014-05-06
- Dataset Reference Date ()
- 2010-01-01
Quality and validity
- Lineage
- Epilithon (water samples): Approximate location of sampling sites was determined from maps to provide good spatial coverage of the Wold River through to the Tamar River. Exact sites were determined in the field, considering accessibility and other logistics. The exact location of each sample site was determined using a Garmin GPS12. Three stones were taken from each of the 20 locations and epilithon removed from a defined area. Samples were kept in the cold and removed to the laboratory for analyses. DNA was extracted from all soil and epilithon samples using the MOBIO Powersoil 96 well DNA extraction kit. DNA was quality checked for purity and yield prior to submission for 454 pyrosequencing to assess both bacterial and eukaryotic biodiversity within each sample. Following bioinformatic sequence processing, sequencing were clustered into operational taxonomic units (OTU) and the data tables display the percentage of each OTU within each sample.
Conformity
Conformity
Conformity
Conformity
Conformity
Conformity
Restrictions on access and use
- Access constraints
- no limitations
- Access constraints
- © UK Centre for Ecology & Hydrology
- Access constraints
- If you reuse this data, you should cite: Griffiths, R., Edwards, F., Scarlett, P., Webb, G., Sarlej, R., Thomson, B. (2014). Operational taxonomic units for epilithon eukaryotes in the rivers Wolf and Tamar catchments. NERC Environmental Information Data Centre https://doi.org/10.5285/18023db5-25d8-44f7-b291-61869f937367
Responsible organization (s)
Contact for the resource
- Organisation name
- UK Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- NERC EDS Environmental Information Data Centre
- enquiries@ceh.ac.uk
- Organisation name
- NERC Environmental Information Data Centre
- enquiries@ceh.ac.uk
- Organisation name
- UK Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
Responsible organization (s)
Contact for the resource
- Organisation name
- UK Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
- Organisation name
- NERC EDS Environmental Information Data Centre
- enquiries@ceh.ac.uk
- Organisation name
- NERC Environmental Information Data Centre
- enquiries@ceh.ac.uk
- Organisation name
- UK Centre for Ecology & Hydrology
- enquiries@ceh.ac.uk
Metadata information
Contact for the metadata
- Organisation name
- NERC EDS Environmental Information Data Centre
- info@eidc.ac.uk
- Metadata Date
- 2024-02-27T16:19:12
- Metadata Language
- English (en)
- Character set
- utf8