Antibiotic resistance and resistant genes in Escherichia coli from human, poultry and environmental samples in urban and rural Bangladesh (2017-18)
The dataset includes information on antibiotic-resistance and resistance genes in bacteria (Escherichia coli) from humans, poultry and the environment in rural households, poultry farms and urban food markets. The rural households and poultry farms (broiler chickens) were located in Mirzapur, Tangail district; and urban food markets were located in Dhaka city, Bangladesh. Environmental samples were collected from surface water, water supply, wastewater, soil, animal faeces (poultry and cattle) and solid waste between February 2017 and October 2018 . DNA samples from antibiotic-resistant bacteria found in all samples were analysed for quantitative assessment of two resistance genes. Trained staff from the International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b) undertook sample collection and laboratory analysis. The aim of the study was to assess the prevalence and abundance of antibiotic-resistant bacteria and associated genes among humans, poultry and environmental compartments in Bangladesh. The survey was part of a wider research project, Spatial and Temporal Dynamics of Antimicrobial Resistance Transmission from the Outdoor Environment to Humans in Urban and Rural Bangladesh. The research was funded by NERC/BBSRC/MRC on behalf of the Antimicrobial Resistance Cross-Council Initiative award NE/N019555/1. Full details about this dataset can be found at
https://doi.org/10.5285/0239cdaf-deab-4151-8f68-715063eaea45
INSPIRE
Identification
- File identifier
- 0239cdaf-deab-4151-8f68-715063eaea45 XML
- Resource type
- dataset
Online resource
Resource identifier
- Metadata Language
- English (en)
- Spatial representation type
- textTable
Encoding
- Format
- Comma-separated values (CSV)
Projection
- code
- WGS 84
Classification of data and services
- Topic category
-
- Health
Classification of data and services
Coupled resource
Coupled resource
Classification of data and services
Coupled resource
Coupled resource
Geographic coverage
N
S
E
W
Temporal reference
Temporal extent
Temporal extent
- Dataset Reference Date ()
- 2019-02-08
Quality and validity
- Lineage
- Samples were collected in the field and transported to the International Centre for Diarrhoeal Disease Research, Bangladesh to undergo laboratory analysis and storage. Field measurements and laboratory results were recorded on paper-based forms or generated from automated readings, entered into Excel then converted to .csv files for ingestion into the Environmental Information Data Centre.
- Distance
- 1 urn:ogc:def:uom:EPSG::9001
Conformity
Conformity
Conformity
Conformity
Conformity
Conformity
Restrictions on access and use
- Access constraints
- no limitations
- Access constraints
- © Loughborough University
- Access constraints
- © International Centre for Diarrhoeal Disease Research, Bangladesh
- Access constraints
- If you reuse this data, you should cite: Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B. , Mozmader, T.I.M.A, Hossain M. I., Rahman, M., Wood, P. J. (2019). Antibiotic resistance and resistant genes in Escherichia coli from human, poultry and environmental samples in urban and rural Bangladesh (2017-18). NERC Environmental Information Data Centre https://doi.org/10.5285/0239cdaf-deab-4151-8f68-715063eaea45
Responsible organization (s)
Contact for the resource
- Organisation name
- NERC EDS Environmental Information Data Centre
- enquiries@ceh.ac.uk
- Organisation name
- NERC Environmental Information Data Centre
- enquiries@ceh.ac.uk
- Organisation name
- Loughborough University
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- Loughborough University
- enquiries@ceh.ac.uk
- Organisation name
- Loughborough University
- enquiries@ceh.ac.uk
Responsible organization (s)
Contact for the resource
- Organisation name
- NERC EDS Environmental Information Data Centre
- enquiries@ceh.ac.uk
- Organisation name
- NERC Environmental Information Data Centre
- enquiries@ceh.ac.uk
- Organisation name
- Loughborough University
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- International Centre for Diarrhoeal Disease Research, Bangladesh
- enquiries@ceh.ac.uk
- Organisation name
- Loughborough University
- enquiries@ceh.ac.uk
- Organisation name
- Loughborough University
- enquiries@ceh.ac.uk
Metadata information
Contact for the metadata
- Organisation name
- NERC EDS Environmental Information Data Centre
- info@eidc.ac.uk
- Metadata Date
- 2024-03-01T11:27:38
- Metadata Language
- English (en)
- Character set
- utf8