NERC Data Catalogue Service
Compositional and growth assay data for tree-hole bacteria communities under differing pH conditions, sampled summer 2021, Wytham Woods, Oxford
The data comprises both compositional data and growth assay data from an experiment of wild bacterial communities in Wytham Woods, Oxford. The communities live in puddles of water in tree-holes formed by the roots of beech trees. We manipulated the pH of tree-holes during the experiment for comparison with control tree-holes that were unmanipulated. Compositional data comprises the frequency of different Amplicon Sequencing Variants and derived measures of species diversity for samples taken over time (up to 12 weeks from the start of the experiment). The growth assay data comprises measurements of growth rates of community samples and isolates back in the laboratory, when grown on beech tea media manipulated to have different pHs. Full details about this dataset can be found at
https://doi.org/10.5285/9d64f2bd-2918-416f-b08c-3369edbc1b30
Simple
- Date (Publication)
- 2025-10-20
- Identifier
- doi: / 10.5285/9d64f2bd-2918-416f-b08c-3369edbc1b30
- Other citation details
- Barraclough, T.G., Sant, D.G., Wong, E.L.Y. (2025). Compositional and growth assay data for tree-hole bacteria communities under differing pH conditions, sampled summer 2021, Wytham Woods, Oxford. NERC EDS Environmental Information Data Centre 10.5285/9d64f2bd-2918-416f-b08c-3369edbc1b30
Author
Rutgers, The State University of New Jersey
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Sant, D.G.
https://orcid.org/0000-0001-6865-3161
- GEMET - INSPIRE themes, version 1.0
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- Environmental Monitoring Facilities
- Access constraints
- otherRestrictions Other restrictions
- Other constraints
- no limitations
- Use constraints
- otherRestrictions Other restrictions
- Use constraints
- otherRestrictions Other restrictions
- Other constraints
- If you reuse this data, you should cite: Barraclough, T.G., Sant, D.G., Wong, E.L.Y. (2025). Compositional and growth assay data for tree-hole bacteria communities under differing pH conditions, sampled summer 2021, Wytham Woods, Oxford. NERC EDS Environmental Information Data Centre https://doi.org/10.5285/9d64f2bd-2918-416f-b08c-3369edbc1b30
- Spatial representation type
- textTable Text, table
- Metadata language
- EnglishEnglish
- Character set
- utf8 UTF8
- Topic category
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- Biota
- Begin date
- 2021-05-11
- End date
- 2021-09-29
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E
W
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- Unique resource identifier
- OSGB 1936 / British National Grid
- Distribution format
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Comma-separated values (CSV)
()
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Comma-separated values (CSV)
()
- OnLine resource
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Supporting information
Supporting information available to assist in re-use of this dataset
- OnLine resource
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- Hierarchy level
- dataset Dataset
- Other
- dataset
Conformance result
- Date (Publication)
- 2010-12-08
- Statement
- A field experiment was conducted in summer 2021 that surveyed bacterial communities in tree-hole puddles formed by beech tree roots at Wytham Woods, Oxford. The experiment added lime (alkali) to a set of tree-holes and compared changes in bacterial communities to control tree-holes without liming. Samples were collected before and after the manipulation, and some of these were used for growth assays in the laboratory: growing different combinations of isolates and communities on beech tea medium with modified pH.
- File identifier
- 9d64f2bd-2918-416f-b08c-3369edbc1b30 XML
- Metadata language
- EnglishEnglish
- Character set
- ISO/IEC 8859-1 (also known as Latin 1) 8859 Part 1
- Hierarchy level
- dataset Dataset
- Hierarchy level name
- dataset
- Date stamp
- 2025-10-20T15:12:56
- Metadata standard name
- UK GEMINI
- Metadata standard version
- 2.3
Point of contact
NERC EDS Environmental Information Data Centre
Lancaster Environment Centre, Library Avenue, Bailrigg
,
Lancaster
,
LA1 4AP
,
UK
https://eidc.ac.uk/
Overviews
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