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Component model iterations for inputs into a multi-scale model describing the effect of host conditions on Hendra virus shedding, eastern Australia, 2008-2019

The data provided here are model iteration objects and rasters needed to run the multi-scale modelling process and predict how the host condition affects probability of Hendra virus shedding. The dataset contains predictions of three proxies for host conditions (including food shortage, rehabilitation admissions and formation of a new roost) across eastern Australia in 2008-2019. The Roost Species Distribution Model (SDM) has predictions of roost suitability. These are monthly, spatially explicit predictions of particular conditions or probability of roost occupations. The model objects are iterations of models that were initially trained on data held in figshare (https://figshare.com/s/ddb5a1584609b20f6596). These data objects are linked with code provided at https://github.com/hanlab-ecol/BatOneHealth to be able to run the models and analyses. This includes comparisons of virus predictions of seven different multiscale model structures to observed Hendra virus shedding in field surveys. The purpose of this study was to determine if quantifying and incorporating host condition into epidemiological models improves predictions of virus shedding in space and time. The data objects relate to the 1,000 iterations run of this process to better able to account for uncertainty. Full details about this dataset can be found at https://doi.org/10.5285/93bb37c6-ef86-4386-945d-c1a3d1e2683c

Simple

Date (Publication)
2025-03-03
Identifier
https://catalogue.ceh.ac.uk/id/93bb37c6-ef86-4386-945d-c1a3d1e2683c
Identifier
doi: / 10.5285/93bb37c6-ef86-4386-945d-c1a3d1e2683c
Other citation details
Kramer, A.M., Faust, C.L., Castellanos, A.A., Fischhoff, I.R., Peel, A.J., Eby, P., Ruiz-Aravena, M., Borremans, B., Plowright, R.K., Han, B.A. (2025). Component model iterations for inputs into a multi-scale model describing the effect of host conditions on Hendra virus shedding, eastern Australia, 2008-2019. NERC EDS Environmental Information Data Centre 10.5285/93bb37c6-ef86-4386-945d-c1a3d1e2683c
Author
  University of South Florida - Kramer, A.M.
https://orcid.org/0000-0002-9031-6580
Author
  University of Glasgow - Faust, C.L.
https://orcid.org/0000-0002-8824-7424
Point of contact
  University of Glasgow - Faust, C.L.
https://orcid.org/0000-0002-8824-7424
Author
  Cary Institute - Castellanos, A.A.
https://orcid.org/0000-0002-3412-0487
Author
  Cary Institute - Fischhoff, I.R.
https://orcid.org/0000-0001-6956-8284
Author
  University of Sydney - Peel, A.J.
https://orcid.org/0000-0003-3538-3550
Author
  University of New South Wales - Eby, P.
https://orcid.org/0000-0001-5441-2682
Author
  Cornell University - Ruiz-Aravena, M.
https://orcid.org/0000-0001-8463-7858
Author
  Wildlife Health Ecology Research Organization - Borremans, B.
https://orcid.org/0000-0002-7779-4107
Author
  Cornell University - Plowright, R.K.
https://orcid.org/0000-0002-3338-6590
Author
  Cary Institute - Han, B.A.
https://orcid.org/0000-0002-9948-3078
Owner
  University of Glasgow
Publisher
  NERC EDS Environmental Information Data Centre
Custodian
  NERC EDS Environmental Information Data Centre
GEMET - INSPIRE themes, version 1.0
  • Species Distribution
Access constraints
otherRestrictions Other restrictions
Other constraints
no limitations
Use constraints
otherRestrictions Other restrictions
Other constraints
This resource is available under the terms of the Open Government Licence
Use constraints
otherRestrictions Other restrictions
Other constraints
If you reuse this data, you should cite: Kramer, A.M., Faust, C.L., Castellanos, A.A., Fischhoff, I.R., Peel, A.J., Eby, P., Ruiz-Aravena, M., Borremans, B., Plowright, R.K., Han, B.A. (2025). Component model iterations for inputs into a multi-scale model describing the effect of host conditions on Hendra virus shedding, eastern Australia, 2008-2019. NERC EDS Environmental Information Data Centre https://doi.org/10.5285/93bb37c6-ef86-4386-945d-c1a3d1e2683c
Spatial representation type
grid Grid
Distance
5000  urn:ogc:def:uom:EPSG::9001
Metadata language
EnglishEnglish
Character set
utf8 UTF8
Topic category
  • Biota
  • Health
Begin date
2008-01-01
End date
2019-12-31
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S
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W
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Reference system identifier
GDA2020/SA Lambert
Distribution format
  • TIFF ()

  • rdata ()

Distributor
  NERC EDS Environmental Information Data Centre
OnLine resource
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Supporting information

Supporting information available to assist in re-use of this dataset

Hierarchy level
dataset Dataset
Other
dataset

Conformance result

Date (Publication)
2010-12-08
Statement
Each of the data objects (1,000 per component model) is related to training a component model using data sampled with replacement. These data objects are trained on field observations of host conditions (food shortage, rehabilitation admissions or formation of new roost) or locations and occupation of roost by black flying foxes (key Hendra virus host). Model parameters, predictor variables, and training are all described in the supplementary information. Each iteration only differs slightly in the training and testing data due to this resampling with replacement, allowing for slight variation in prediction among the runs.
File identifier
93bb37c6-ef86-4386-945d-c1a3d1e2683c XML
Metadata language
EnglishEnglish
Character set
ISO/IEC 8859-1 (also known as Latin 1) 8859 Part 1
Hierarchy level
dataset Dataset
Hierarchy level name
dataset
Date stamp
2025-06-03T07:43:20
Metadata standard name
UK GEMINI
Metadata standard version
2.3
Point of contact
  NERC EDS Environmental Information Data Centre
Lancaster Environment Centre, Library Avenue, Bailrigg , Lancaster , LA1 4AP , UK
https://eidc.ac.uk/
 
 

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Spatial extent

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Keywords

GEMET - INSPIRE themes, version 1.0
Species Distribution

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