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A study of adaptive radiation in an intertidal marine isopod in the North Atlantic, 2015-2016

This dataset consists of the results of the genetic comparison of different species of the genus Jaera, a marine isopod, in the UK and USA. Jaera albifrons, J. forsmani, J. ischiosetosa, J. nordmanni and J. praehirsuta were collected from the underside of rocks at intertidal sites in the the UK. In the USA, J. posthirsuta, J. albifrons, J. ischiosetosa were similarly collected from sites in Maine and Massachusetts. Sample collection took place in 2015 and 2016. Sbf1 gene Restriction site Associated DNA (RAD) libraries were generated from total DNA using Illumina paired end DNA sequencing. In addition, individual microbiomes were characterised for Jaera albifrons, J. ischiosetosa, J. nordmanni, J. posthirsuta from UK populations using 16S rDNA metabarcode amplicon sequencing. The project aimed to assess parallel signatures of evolution across isolated populations and pinpoint regions of elevated genetic differentiation. All sampling and sequencing pipelines were undertaken by Marius Wenzel and Stuart Piertney (University of Aberdeen), with funding from NERC solo grant NE/M015661/1. Data are archived at the National Center for Biotechnology Information (NCBI).

Simple

Alternate title
British Oceanographic Data Centre record 1048_NE_M015661_1
Date (Publication)
2022-02-18
Date (Creation)
2023-11-20
Date (Revision)
2024-07-12
Identifier
http://www.bodc.ac.uk/ / EDMED7076
Owner
  University of Aberdeen, School of Biological Sciences - Unknown ( Unknown )
Zoology Building, Tillydrone Avenue , Aberdeen , Aberdeenshire , AB24 2TZ , United Kingdom
+44 (0)1224 272861
http://www.abdn.ac.uk/biologicalsci/
Originator
  University of Aberdeen, School of Biological Sciences - Unknown ( Unknown )
Zoology Building, Tillydrone Avenue , Aberdeen , Aberdeenshire , AB24 2TZ , United Kingdom
+44 (0)1224 272861
http://www.abdn.ac.uk/biologicalsci/
Custodian
  British Oceanographic Data Centre - Director
Joseph Proudman Building , 6 Brownlow Street , Liverpool , Merseyside , L3 5DA , United Kingdom
https://www.bodc.ac.uk/
Distributor
  British Oceanographic Data Centre - Director
Joseph Proudman Building , 6 Brownlow Street , Liverpool , Merseyside , L3 5DA , United Kingdom
https://www.bodc.ac.uk/
Maintenance and update frequency
asNeeded As needed
MEDIN metadata record availability
  • Marine Environmental Data and Information Network
  • Natural Environment Research Council Designated Data Centres
SeaVoX Vertical Co-ordinate Coverages
  • unknown
GEMET - INSPIRE themes, version 1.0
  • Species distribution
SeaDataNet Parameter Discovery Vocabulary
  • Molecular biology parameters
Access constraints
otherRestrictions Other restrictions
Other constraints
No limitations apply
Other constraints
Data are freely available to all following agreement to the terms and conditions of a Data Licence
Use constraints
otherRestrictions Other restrictions
Other constraints
Usage restrictions are specified in the terms of the licence
Spatial representation type
Text, table
Metadata language
EnglishEnglish
Topic category
  • Biota
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W
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Geographic identifier
North Sea

Date (Revision)
2024-12-11

Geographic identifier
Atlantic Ocean

Date (Revision)
2024-12-11

Begin date
2015-01-01
End date
2016-12-31
Unique resource identifier
urn:ogc:def:crs:EPSG::4326
Codespace
OGP
Distribution format
  • Binary ()

  • Delimited ()

  • Text or Plaintext ()

OnLine resource
Dataset Web Site

Raw sequence reads held at NCBI

Hierarchy level
dataset Dataset

Conformance result

Date (Publication)
2010-12-08
Explanation
BODC protocols are based on the Open Archival Information System (OAIS) model enabling BODC to iterate towards compliance with the on-going evolution and development of community requirements including FAIR (Findable,Accessible,Interoperable,Reusable), TRUST (Transparency, Responsibility, User community, Sustainability, Technology) and CARE (Collective Benefit, Authority to Control, Responsibility, Ethics). Data managers quality assure submissions and assemble the metadata necessary for curation. Submissions (as received) are placed in a long-term accession and stored in triplicate across multiple sites. Appropriate data are transferred into a standard internal format with source variable names mapped to controlled vocabularies, documentation assembled, and metadata loaded into BODC databases. Access to these data is through direct request, the BODC website and through partner repositories such as SeaDataNet. Access control is attained by assigning a data policy to each set of data and this policy is used to administer access when data are requested. Discovery metadata is aligned with EU INSPIRE (through MEDIN) and SeaDataNet community standards. Data are converted to open community formats including Ocean Data View ASCII and SeaDataNet NetCDF, with data described using terms from the NERC vocabulary server. BODC submission agreements are documented on the BODC website and customer service is assured with a dedicated requests team that serve data following local regulations including General Data Protection Regulation (GDPR) 2018 and Environmental Information Regulations (EIR) 2004.
Pass
Yes
Statement
This dataset was created by scientists at the University of Aberdeen School of Biological Sciences, following their in-house data processing and quality control procedures. The data were then archived at the National Center for Biotechnology and Information (NCBI), and the metadata were archived at the British Oceanographic Data Centre (BODC). BODC created the discovery metadata record which provides details of the dataset location at NCBI.Instrument(s) used to collect data: autoanalysers.
File identifier
0df5669d46645064885b95fcc5ccc733 XML
Metadata language
EnglishEnglish
Hierarchy level
dataset Dataset
Date stamp
2025-06-09T15:21:05
Metadata standard name
MEDIN
Metadata standard version
3.1.2
Point of contact
  British Oceanographic Data Centre - Polly Hadžiabdić ( Head of the BODC Requests Team )
Joseph Proudman Building , 6 Brownlow Street , Liverpool , Merseyside , L3 5DA , United Kingdom
https://www.bodc.ac.uk/
 
 

Overviews

Spatial extent

N
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W
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Keywords


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