Bacterial production in the water column
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The data set comprises hydrographic, biogeochemical and biological data, including measurements of temperature, salinity and attenuance, plus concentrations of parameters such as nutrients, pigments, urea, hydrocarbons, sedimentation flux, sulphur and dissolved carbon. Analyses of bacterial, zooplankton and phytoplankton communities were also undertaken. The oceanographic data were supplemented by measurements of surface meteorological parameters. Data were collected across three repeated sections: one along the Gulf of Oman; a section at 67deg East from 8 to 14.5deg North; and a major section from 8deg North, 67 deg East to the coast of Oman. Other one-off sections were also traversed in the Arabian Sea and Gulf of Oman areas. Measurements were collected during two cruises: one between 27 August and the 4 October 1994 and the other between the 16 November and the 19 December 1994. Sections were covered by underway surface ocean measurements (one minute sampling of multiple parameters providing some 5 million measurements) complemented by a total of 21 CTD/water-bottle stations, 14 of which were repeated. ARABESQUE was organised by the Plymouth Marine Laboratory of NERC's Centre for Coastal and Marine Sciences and involved the University of Wales, Bangor; Queen's University of Belfast; University of East Anglia; University of Edinburgh; University of Newcastle; the Bedford Institute of Oceanography, Canada; the Max Planck Institute for Limnology, Germany and the Sultan Qaboos University, Oman. Data management support for the project was provided by the British Oceanographic Data Centre. All data collected as part of the project were lodged with BODC who had responsibility for assembling, calibrating, quality controlling and fully documenting the data. BODC checked for instrument spikes or malfunction, values beyond the calibration range, unreasonable ratios of chemical constituents and unreasonable deviations from climatological means. Data were assembled into a relational database, complete with supporting documentation and a user manual. The full data set has been published by BODC on CD-ROM complete with user interface.
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The dataset contains physical, biological and chemical oceanographic measurements, and meteorological data. Hydrographic measurements include temperature, salinity, current velocities, attenuance, dissolved oxygen and fluorescence, while water samples were analysed for concentrations of nutrients, pigments, suspended particulates, metals and halocarbons. Samples were also collected for phytoplankton and zooplankton analyses, while results from production experiments are also included in the data set. These oceanographic data are supplemented by surface meteorological measurements. The data were collected at 357 sites in the NE Atlantic, 308 of which are from cruises centering on 20 W, 47 to 60 N, 16 from the Cape Verde Islands and 33 in a coccolithophore bloom just south of Iceland. Measurements were taken from 3 cruises in 1989, 6 cruises in 1990 and 2 cruises in 1991. The data were collected via (i) underway sampling (SeaSoar Undulating Oceanographic Recorder (UOR), hull-mounted acoustic Doppler current profiler (ADCP), meteorology and surface ocean parameters) of which there are 793430 records at 30 second intervals from 11 cruises and (ii) discrete sampling (conductivity-temperature-depth (CTD) and expendable bathythermograph (XBT) casts, bottle stations, net hauls, productivity incubations, stand alone pump (SAP) and sediment trap deployments, cores) of which there are 2215 deployments/experiments. The aim of the Biogeochemical Ocean Flux Study (BOFS) Community Research Project was to study the role of oceans in the global cycling of carbon. The data were collected and supplied by UK participants in the Joint Global Ocean Flux Study (JGOFS). The British Oceanographic Data Centre (BODC) had responsibility for calibrating, processing, quality controlling and documenting the data and assembling the final data set. The underway data are stored as time series for each cruise merged with the navigation data. The data are fully quality controlled. Checks were made for instrument malfunction, fouling, constant values, spikes, spurious values, calibration errors and baseline corrections. The discrete data are stored in a relational database (Oracle RDBMS), mainly as vertical profiles and are uniquely identified by a combination of deployment number and depth.
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The dataset comprises a wide range of physical and biogeochemical oceanographic and atmospheric parameters, plus additional biological measurements and observations. Hydrographic parameters include temperature, salinity, current velocities, fluorescence and attenuance, while biogeochemical and biological analyses of water samples provided measurements of dissolved gases, hydrocarbons, sulphur species, dissolved organic carbon (DOC), halocarbons, nutrients, pigments, bacteria, phytoplankton and zooplankton. Bird identification and cetacean abundance studies were also undertaken, as were tracer release experiments using both inert chemical (sulphur hexafluoride, SF6) and bacterial (Bacillus globigii) tracers. Meteorological data were also collected, including concentrations of various chemicals, supplemented by standard measurements of air temperature, pressure, irradiance, humidity and wind velocities. The data were collected in the North Atlantic Ocean and North Sea between 1996 and 1998, as follows: Eastern Atlantic off the coast of Ireland (June-July 1996 and May 1997); southern North Sea (October-November 1996); and North Eastern Atlantic between the UK and Iceland (June-July 1998). The data were collected during four cruises (RRS Challenger CH127, CH129, CH133 and RRS Discovery D234) using a variety of equipment, including instrumentation deployed at sampling stations (e.g. conductivity-temperature-depth (CTD) profilers) and underway sensors that ran throughout each cruise, yielding continuous measurements of both hydrographic and meteorological parameters. Discrete air and water samplers were also used to measure atmospheric and hydrographic parameters throughout each cruise. The data collection periods were associated with individual ACOSE air-sea exchange experiments: two Eastern Atlantic Experiments (EAE96 and EAE97); ASGAMAGE in the southern North Sea; and the North Atlantic Experiment, NAE. ACSOE was a 5-year UK NERC Thematic Research Programme investigating the chemistry of the lower atmosphere (0 - 12 km) over the oceans. The Marine Aerosol and Gas Exchange (MAGE) study group was the only component of the ACSOE Project that included measurements in the marine environment. ACSOE data management was a shared responsibility between the British Atmospheric Data Centre (BADC) and the British Oceanographic Data Centre (BODC). BODC handled the management of ship data as well as all other data collected in the water column during the ACSOE/MAGE cruises. BODC assisted in the onboard collection and subsequent working up of ship data, and assembled all marine data in BODC's relational database carrying out quality control and data processing as required. ACSOE was led by Prof. Stuart Penkett of the University of East Anglia and cruise principle scientists included representatives of the University of Newcastle Upon Tyne, and the University of East Anglia.
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The programme involved two major fieldwork activities: a deep ocean research cruise and a programme of freshwater studies. The marine component of the dataset generated a total of 430 distinct variables, quantifying the meteorology, hydrography, chemistry, biogeochemistry, and the microbial plankton (bacteria, phytoplankton and microzooplankton) biomass, taxonomic composition along the 5500 km cruise track in the Indian Ocean during August-September 2001. Measurements were mainly made on water samples collected either from the sea surface while the ship was underway or from a range of depths during conductivity-temperatue-depth (CTD) and water sampling stations at each of 11 sites occupied in the Indian Ocean. The maximum depth sampled at open ocean sites ranged from 300 to 3000 m. Short sections of 300 m deep CTD and fluorescence profiles were also obtained using a moving vessel profiler (MVP). The freshwater component of the dataset generated variables from Priest Pot in the Lake District and from a range of other freshwater sites around the UK. It contains underpinning weekly time-series measurements characterising the physical, chemical and biological condition of the water column at the Priest Pot sampling site between 2002-2004, together with data from studies focused on the seasonal and spatial dynamics of viruses, bacteria and picophytoplankton, trace metal distribution and the ubiquity of microbial protists. The database also contains 376 gene sequences from genetic material extracted from environmental samples. The programme was a 5-year Thematic Programme funded by the Natural Environment Research Council (NERC) and the purpose of the study was to improve understanding of aquatic microbial biodiversity, with the emphasis on community interactions, ecosystem function (e.g. biogeochemical cycling of carbon and nutrients, and the potential for biotechnological exploitation. The programme involved scientists from the Plymouth Marine Laboratory, the National Oceanography Centre Southampton, University of Cardiff School of Biosciences, University of Cardiff School of Earth and Ocean Sciences, University of Warwick School of Biological Sciences, University of Newcastle School of Civil Engineering and Geosciences, University of Bristol School of Biological Sciences, University of Oxford Department of Zoology, University of Liverpool School of Biological Sciences, University of Stirling School of Biological and Environmental Sciences, the Marine Biological Association of the UK, Lancaster University Department of Environmental Science and the Centre for Ecology and Hydrology (CEH) Lancaster and Dorset.
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The dataset comprises hydrographic data, including salinity, temperature, depth, dissolved oxygen, transmittance (for suspended sediment), chlorophyll, irradiance, and current velocities. Both oceanographic and benthic measurements of nutrients (nitrate, nitrite, silicate, phosphate and ammonium), phytoplankton and zooplankton abundance, dissolved and particulate trace metals, primary and bacterial production, sulphur compounds and halocarbons were collected, as well as atmospheric physical and chemical measurements. The data were collected in the North Sea between August 1988 and October 1990 over a series of 38 cruises on RRS Challenger. Oceanographic measurements were taken using hydrographic profilers, moored instruments and shipboard underway systems. Underway meteorological data were also collected in addition to a comprehensive atmospheric sampling programme. Both continuous and discrete water samples were collected, providing biogeochemical and biological data. These were supplemented by net hauls. Benthic processes were investigated with sediment cores taken on eight survey cruises at six sites of varied character, three being in the area of summer stratification. Water and benthic sample analyses were supplemented by results of seabed and shipboard incubation experiments. The North Sea Project evolved from a NERC review of shelf seas research, which identified the need for a concerted multidisciplinary study of circulation, transport and production. The Proudman Oceanographic Laboratory (POL), now the National Oceanography Centre (NOC) hosted the project. It involved over 200 scientists and support staff from the Natural Environment Research Council (NERC), the Ministry of Agriculture, Fisheries and Food (MAFF - now DEFRA) and other academic institutes. The data are held at the British Oceanographic Data Centre and are available on CD-ROM.
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The data set comprises a diverse collection of physical, chemical and biological measurements, encompassing well over 1000 parameters. There are data from over 1000 conductivity-temperature-depth (CTD)/rosette stations, over 440 core profiles, over 180 sediment trap samples, over 140 net hauls and much, much more. The primary study area was a box extending to the base of the slope from Vigo to Cap Finistere. However, data are included from both further offshore (filament tracking) and from the Portuguese Margin. Measurements were taken from November 1996 to October 1999 during 33 cruise legs, involving research vessels from seven nations. Data were collected using a variety of equipment and techniques, including expendable bathythermographs (XBTs), turbulence probes, CTDs and oceanographic undulators with auxiliary sensors. These hydrographic profiles were accompanied by net hauls, plankton recorder deployments, sediment cores and a comprehensive water sampling programmes during which a wide variety of chemical and biological parameters were measured. The station data were supplemented by underway measurements of oceanographic and meteorological properties. Results from production and phosphate uptake experiments are also included in the dataset, as are bathymetric data from multibeam (swath) surveys, coastal upwelling measurements and data from moored instruments and benthic landers. The dataset also includes imagery from satellites, seabed photography and X-ray photographs of core samples. The aim of the project was study biogeochemical processes at the shelf break and to quantify the fluxes of material between the shelf and the open ocean. The project brought together over 100 scientists from 40 research centres and universities throughout Europe. The British Oceanographic Data Centre (BODC) is assembling the data sets collected during OMEX II into its project database system and the data set is also available on CD-ROM.
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The UK Surface Ocean-Lower Atmosphere Study (UK SOLAS) marine fieldwork data set comprises all data, marine or otherwise, collected during sea-going activities. The fieldwork included eight dedicated research cruises in the eastern North Atlantic Ocean, spanning the period 2006-2008. These cross-disciplinary missions resulted in a diverse data catalogue. This includes meteorology (3-D wind speed and direction, total irradiance, Photosynthetically Active Radiation/PAR, air temperature, atmospheric pressure, humidity, aerosol optical thickness); atmospheric composition (carbon dioxide concentration, aerosol particle counts and size spectra, chemical analyses of aerosol particle composition, cloud condensation nuclei/CCN, concentrations of pollutants such as black carbon, concentrations of free radical species such as iodine monoxide and nitrate radicals); chemical and energy-fluxes across the air-sea boundary (dust deposition rates, oxygen and nitrogen fluxes, carbon dioxide fluxes, sensible heat fluxes, latent heat fluxes, momentum fluxes); biological, chemical and physical properties and processes in the sea surface micro-layer (chlorophyll concentration, bacterial production, phytoplankton and bacterial speciation, concentrations of biogenic trace compounds such as halocarbons, nitrous oxide, dimethyl sulphide/DMS and alcohols, surfactant concentrations, halogen concentrations such as iodine, iodide and iodate); biological, chemical and photochemical properties and processes in the ocean subsurface (primary productivity, trace gas production, plankton community composition, nutrient concentration, concentrations of trace metals such as iron, aluminium, manganese, magnesium and cobalt, ligand and complex metal chemistry parameters such as heme, dust dissolution, salinity, temperature, amino acids and urea, carbonate system chemistry including alkalinity); and sea-state physics (breaking waves, wave slope, whitecaps, bubble size spectra, aerosol formation, subsurface acoustics). Additionally, time series of air-sea fluxes were measured from the Norwegian weather ship, Polarfront, between 2006 and 2009. UK SOLAS scientists also participated in the Bergen Mesocosm experiment during 2008. This simulated gas exchanges and biological, chemical and photochemical properties and processes in the sea surface micro-layer under controlled conditions. The study united atmospheric and marine scientists from institutions across the UK and international collaborators. The UK SOLAS data set was intended to advance understanding of the mutual interactions between the atmosphere and the oceans, especially the chemical exchanges that affect ocean productivity, atmospheric composition and climate. It was funded by the UK Natural Environment Research Council, as the UK's contribution to the international Surface Ocean-Lower Atmosphere Study (SOLAS). The data are held at the British Oceanographic Data Centre (BODC) and have been incorporated into the National Oceanographic Database (NODB). Data collected from non-ship based activities, for example land-based atmospheric data and data resulting from campaigns using the Facility for Airborne Atmospheric Measurements (FAAM) aircraft are held at the British Atmospheric Data Centre (BADC).
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The dataset comprises hydrographic profiles (temperature, salinity, oxygen, fluorometer, transmissometer, irradiance) and along track measurements (bathymetry, surface meteorology, sea surface hydrography), with discrete measurements including water chemistry (organic and inorganic nutrients, particulate organic carbon and nitrogen, dissolved gases, trace metals), biology (phytoplankton, zooplankton, primary production, community respiration, chlorophyll, pigments) and atmospheric particulates (major ions, organics and trace metals). Data have been collected from meridional transects of the Atlantic Ocean (between the UK and the Falkland Islands, South Africa or South America) from 1995 to the present day. The Atlantic Meridional Transect (AMT) programme aims to study the factors determining the ecological and biogeochemical variability of planktonic ecosystems in the tropical and temperate Atlantic Ocean, and their links to atmospheric processes. The majority of the data are available to academia for re-use and re-purpose but data from recent cruises may be subject to a moratorium which allows first use for data originators. The AMT is coordinated by Andy Rees (AMT Principal Investigator) and Miss Dawn Ashby (AMT Project Officer) at the Plymouth Marine Laboratory (PML) in conjunction with the National Oceanography Centre. Since its inception the programme has involved researchers from several different countries and has acted as a platform for national and international collaboration. Data are managed by the British Oceanographic Data Centre.
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The data set comprises a diverse collection of physical, chemical and biological measurements, encompassing over 1000 parameters. There are data from over 1650 conductivity-temperature-depth (CTD)/rosette stations, over 300 core profiles, over 370 sediment trap samples and much, much more. Most of this effort was directed at the region of the east Atlantic margin between La Chapelle Bank and the Goban Spur (between France and Ireland). In addition, there were two secondary areas of interest: the Norwegian Shelf Break just off Tromso and the Iberian Margin, either off Vigo or in the vicinity of the Tagus estuary. Measurements were collected from April 1993 until the end of December 1995 during 55 research cruise legs. Data were collected using a variety of equipment and techniques, including expendable bathythermography (XBTs), CTDs and oceanographic undulators with auxiliary sensors. These hydrographic profiles were accompanied by net hauls, plankton recorder deployments, sediment cores and comprehensive water and air sampling programmes during which a wide variety of chemical and biological parameters were measured. The station data were supplemented by underway measurements of oceanographic and meteorological properties. Results from production and trace metal experiments are also included in the dataset, as are bathymetric data from the British Oceanographic Data Centre (BODC) GEBCO digital Atlas, air-sea flux measurements and data from moored instruments and benthic landers that were deployed for periods from a few weeks to a year. The dataset also includes imagery from satellites, water column and seabed photography, scanning electron micrographs and X-ray photographs. FORTRAN source code for biogeochemical models developed during OMEX I is also included. The aim of the project was to study biogeochemical processes at the shelf break and to quantify the fluxes of material between the shelf and the open ocean. OMEX I involved scientists from 30 institutions in 10 countries. BODC is assembling the data sets collected during OMEX I into its database system and the data are also available on CD-ROM.