dda6dd55-f955-4dd5-bc03-b07cc8548a3d English ISO/IEC 8859-1 (also known as Latin 1) dataset dataset NERC EDS Environmental Information Data Centre Lancaster Environment Centre, Library Avenue, Bailrigg Lancaster LA1 4AP UK info@eidc.ac.uk https://eidc.ac.uk/ EIDC website The Environmental Information Data Centre (EIDC) is the UK's national data centre for terrestrial and freshwater sciences. information pointOfContact 2025-11-13T16:25:58 UK GEMINI 2.3 WGS 84 Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017) 2019-02-11 publication 2018-12-15 creation https://catalogue.ceh.ac.uk/id/dda6dd55-f955-4dd5-bc03-b07cc8548a3d 10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d doi: Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre 10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d Antibiotic susceptibility tests are presented as the zone of inhibition using the disc-diffusion method, and categorized as resistant, intermediate or susceptible. DNA samples from antibiotic-resistant bacteria were analysed for the presence or absence of resistance genes using polymerase chain reaction (PCR). Laboratory analyses were conducted by trained staff at the International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b). The aim of the study was to identify the antibiotic-susceptibility profiles and resistance genes of bacteria (Escherichia coli) obtained from humans, poultry and the environment. Bacterial isolates previously identified with resistance to third-generation cephalosporins or carbapenems were included in the analysis. Bacterial samples originated from rural households and poultry farms (broiler chickens) in Mirzapur, Tangail district; and urban food markets in Dhaka city, Bangladesh. Environmental samples included surface water, water supply, wastewater, soil, animal faeces (poultry and cattle) and solid waste. The survey was part of a wider research project, Spatial and Temporal Dynamics of Antimicrobial Resistance Transmission from the Outdoor Environment to Humans in Urban and Rural Bangladesh. The research was funded by NERC/BBSRC/MRC on behalf of the Antimicrobial Resistance Cross-Council Initiative award NE/N019555/1. Full details about this dataset can be found at https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d Rousham, E. Loughborough University e.k.rousham@lboro.ac.uk pointOfContact Rousham, E.K. Loughborough University e.k.rousham@lboro.ac.uk https://orcid.org/0000-0001-5654-9279 ORCID record ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities and outputs to these identifiers. information author Islam, M.A. International Centre for Diarrhoeal Disease Research, Bangladesh maislam@icddrb.org https://orcid.org/0000-0001-5107-5289 ORCID record ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities and outputs to these identifiers. information author Unicomb, L. International Centre for Diarrhoeal Disease Research, Bangladesh leanne@icddrb.org author Asaduzzaman, M. International Centre for Diarrhoeal Disease Research, Bangladesh asaduzzaman@icddrb.org https://orcid.org/0000-0001-9048-7980 ORCID record ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities and outputs to these identifiers. information author Islam, R. International Centre for Diarrhoeal Disease Research, Bangladesh rayhanul.islam@icddrb.org author Amin, B. International Centre for Diarrhoeal Disease Research, Bangladesh badrul.amin@icddrb.org author Mozmader, T.I.M.A. International Centre for Diarrhoeal Disease Research, Bangladesh amin.uddin@icddrb.org author Hossain, M.I. International Centre for Diarrhoeal Disease Research, Bangladesh iqbal.hossain@icddrb.org author Rahman, M. International Centre for Diarrhoeal Disease Research, Bangladesh mahdia@icddrb.org author NERC EDS Environmental Information Data Centre info@eidc.ac.uk custodian NERC Environmental Information Data Centre info@eidc.ac.uk publisher notPlanned Escherichia coli Wikidata 2012-10-29 creation antibiotic coliform bacterium microbiology infectious disease resistance (biological) GEMET - Concepts, version 4.1.3 2019-01-28 creation Bangladesh GeoNames 2006-01-01 creation antibiotic susceptibility tests antimicrobial resistance bacterial counts carbapenem third-generation cephalosporin DNA otherRestrictions no limitations otherRestrictions © Loughborough University otherRestrictions © International Centre for Diarrhoeal Disease Research, Bangladesh otherRestrictions This resource is made available under the terms of the Open Government Licence otherRestrictions © Natural Environment Research Council otherRestrictions If you reuse this data, you should cite: Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d textTable English utf8 health 2017-02-01 2018-10-31 87.284 98.402 20.314 29.926 Comma-separated values (CSV) NERC EDS Environmental Information Data Centre info@eidc.ac.uk distributor https://data-package.ceh.ac.uk/data/dda6dd55-f955-4dd5-bc03-b07cc8548a3d Download the data Download a copy of this data download https://data-package.ceh.ac.uk/sd/dda6dd55-f955-4dd5-bc03-b07cc8548a3d.zip Supporting information Supporting information available to assist in re-use of this dataset information dataset dataset Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services 2010-12-08 Water (drinking, stream, waste and pond), soil and faecal samples were collected from farms and urban markets. Laboratory analysis of bacterial samples took place at International Centre for Diarrhoeal Disease Research , Dhaka, Bangladesh. Laboratory results were recorded on paper-based forms or generated from automated readings, entered into Excel then converted to .csv files for ingestion into the Environmental Information Data Centre. Reference organisms and Clinical and Laboratory Standard Institute (CLSI) guidelines were followed.