Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017)
Antibiotic susceptibility tests are presented as the zone of inhibition using the disc-diffusion method, and categorized as resistant, intermediate or susceptible. DNA samples from antibiotic-resistant bacteria were analysed for the presence or absence of resistance genes using polymerase chain reaction (PCR). Laboratory analyses were conducted by trained staff at the International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b). The aim of the study was to identify the antibiotic-susceptibility profiles and resistance genes of bacteria (Escherichia coli) obtained from humans, poultry and the environment. Bacterial isolates previously identified with resistance to third-generation cephalosporins or carbapenems were included in the analysis. Bacterial samples originated from rural households and poultry farms (broiler chickens) in Mirzapur, Tangail district; and urban food markets in Dhaka city, Bangladesh. Environmental samples included surface water, water supply, wastewater, soil, animal faeces (poultry and cattle) and solid waste. The survey was part of a wider research project, Spatial and Temporal Dynamics of Antimicrobial Resistance Transmission from the Outdoor Environment to Humans in Urban and Rural Bangladesh. The research was funded by NERC/BBSRC/MRC on behalf of the Antimicrobial Resistance Cross-Council Initiative award NE/N019555/1. Full details about this dataset can be found at
https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Simple
- Date (Publication)
- 2019-02-11
- Date (Creation)
- 2018-12-15
- Identifier
- doi: / 10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
- Other citation details
- Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre 10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Author
International Centre for Diarrhoeal Disease Research, Bangladesh
-
Islam, M.A.
https://orcid.org/0000-0001-5107-5289
Author
International Centre for Diarrhoeal Disease Research, Bangladesh
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Asaduzzaman, M.
https://orcid.org/0000-0001-9048-7980
- Maintenance and update frequency
- notPlanned Not planned
- Wikidata
- GEMET - Concepts, version 4.1.3
- GeoNames
- Keywords
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- antibiotic susceptibility tests
- antimicrobial resistance
- bacterial counts
- carbapenem
- third-generation cephalosporin
- DNA
- Access constraints
- otherRestrictions Other restrictions
- Other constraints
- no limitations
- Use constraints
- otherRestrictions Other restrictions
- Other constraints
- © Loughborough University
- Use constraints
- otherRestrictions Other restrictions
- Other constraints
- © International Centre for Diarrhoeal Disease Research, Bangladesh
- Use constraints
- otherRestrictions Other restrictions
- Use constraints
- otherRestrictions Other restrictions
- Other constraints
- © Natural Environment Research Council
- Use constraints
- otherRestrictions Other restrictions
- Other constraints
- If you reuse this data, you should cite: Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
- Spatial representation type
- textTable Text, table
- Metadata language
- EnglishEnglish
- Character set
- utf8 UTF8
- Topic category
-
- Health
- Begin date
- 2017-02-01
- End date
- 2018-10-31
N
S
E
W
- Unique resource identifier
- WGS 84
- Distribution format
-
-
Comma-separated values (CSV)
()
-
Comma-separated values (CSV)
()
- OnLine resource
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Download the data
Download a copy of this data
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Supporting information
Supporting information available to assist in re-use of this dataset
- Hierarchy level
- dataset Dataset
- Other
- dataset
Conformance result
- Date (Publication)
- 2010-12-08
- Statement
- Water (drinking, stream, waste and pond), soil and faecal samples were collected from farms and urban markets. Laboratory analysis of bacterial samples took place at International Centre for Diarrhoeal Disease Research , Dhaka, Bangladesh. Laboratory results were recorded on paper-based forms or generated from automated readings, entered into Excel then converted to .csv files for ingestion into the Environmental Information Data Centre. Reference organisms and Clinical and Laboratory Standard Institute (CLSI) guidelines were followed.
- File identifier
- dda6dd55-f955-4dd5-bc03-b07cc8548a3d XML
- Metadata language
- EnglishEnglish
- Character set
- ISO/IEC 8859-1 (also known as Latin 1) 8859 Part 1
- Hierarchy level
- dataset Dataset
- Hierarchy level name
- dataset
- Date stamp
- 2025-11-13T16:25:58
- Metadata standard name
- UK GEMINI
- Metadata standard version
- 2.3
Point of contact
NERC EDS Environmental Information Data Centre
Lancaster Environment Centre, Library Avenue, Bailrigg
,
Lancaster
,
LA1 4AP
,
UK
https://eidc.ac.uk/
Overviews
Spatial extent
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NERC Data Catalogue Service