• NERC Data Catalogue Service
  •  
  •  
  •  

Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017)

Antibiotic susceptibility tests are presented as the zone of inhibition using the disc-diffusion method, and categorized as resistant, intermediate or susceptible. DNA samples from antibiotic-resistant bacteria were analysed for the presence or absence of resistance genes using polymerase chain reaction (PCR). Laboratory analyses were conducted by trained staff at the International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b). The aim of the study was to identify the antibiotic-susceptibility profiles and resistance genes of bacteria (Escherichia coli) obtained from humans, poultry and the environment. Bacterial isolates previously identified with resistance to third-generation cephalosporins or carbapenems were included in the analysis. Bacterial samples originated from rural households and poultry farms (broiler chickens) in Mirzapur, Tangail district; and urban food markets in Dhaka city, Bangladesh. Environmental samples included surface water, water supply, wastewater, soil, animal faeces (poultry and cattle) and solid waste. The survey was part of a wider research project, Spatial and Temporal Dynamics of Antimicrobial Resistance Transmission from the Outdoor Environment to Humans in Urban and Rural Bangladesh. The research was funded by NERC/BBSRC/MRC on behalf of the Antimicrobial Resistance Cross-Council Initiative award NE/N019555/1. Full details about this dataset can be found at https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d

Simple

Date (Publication)
2019-02-11
Date (Creation)
2018-12-15
Identifier
https://catalogue.ceh.ac.uk/id/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Identifier
doi: / 10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Other citation details
Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre 10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Point of contact
  Loughborough University - Rousham, E.
Author
  Loughborough University - Rousham, E.K.
https://orcid.org/0000-0001-5654-9279
Author
  International Centre for Diarrhoeal Disease Research, Bangladesh - Islam, M.A.
https://orcid.org/0000-0001-5107-5289
Author
  International Centre for Diarrhoeal Disease Research, Bangladesh - Unicomb, L.
Author
  International Centre for Diarrhoeal Disease Research, Bangladesh - Asaduzzaman, M.
https://orcid.org/0000-0001-9048-7980
Author
  International Centre for Diarrhoeal Disease Research, Bangladesh - Islam, R.
Author
  International Centre for Diarrhoeal Disease Research, Bangladesh - Amin, B.
Author
  International Centre for Diarrhoeal Disease Research, Bangladesh - Mozmader, T.I.M.A.
Author
  International Centre for Diarrhoeal Disease Research, Bangladesh - Hossain, M.I.
Author
  International Centre for Diarrhoeal Disease Research, Bangladesh - Rahman, M.
Custodian
  NERC EDS Environmental Information Data Centre
Publisher
  NERC Environmental Information Data Centre
Maintenance and update frequency
notPlanned Not planned
Wikidata
  • Escherichia coli
GEMET - Concepts, version 4.1.3
  • antibiotic
  • coliform bacterium
  • microbiology
  • infectious disease
  • resistance (biological)
GeoNames
  • Bangladesh
Keywords
  • antibiotic susceptibility tests
  • antimicrobial resistance
  • bacterial counts
  • carbapenem
  • third-generation cephalosporin
  • DNA
Access constraints
otherRestrictions Other restrictions
Other constraints
no limitations
Use constraints
otherRestrictions Other restrictions
Other constraints
© Loughborough University
Use constraints
otherRestrictions Other restrictions
Other constraints
© International Centre for Diarrhoeal Disease Research, Bangladesh
Use constraints
otherRestrictions Other restrictions
Other constraints
This resource is made available under the terms of the Open Government Licence
Use constraints
otherRestrictions Other restrictions
Other constraints
© Natural Environment Research Council
Use constraints
otherRestrictions Other restrictions
Other constraints
If you reuse this data, you should cite: Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Spatial representation type
textTable Text, table
Metadata language
EnglishEnglish
Character set
utf8 UTF8
Topic category
  • Health
Begin date
2017-02-01
End date
2018-10-31
N
S
E
W
thumbnail


Unique resource identifier
WGS 84
Distribution format
  • Comma-separated values (CSV) ()

Distributor
  NERC EDS Environmental Information Data Centre
OnLine resource
Download the data

Download a copy of this data

OnLine resource
Supporting information

Supporting information available to assist in re-use of this dataset

Hierarchy level
dataset Dataset
Other
dataset

Conformance result

Date (Publication)
2010-12-08
Statement
Water (drinking, stream, waste and pond), soil and faecal samples were collected from farms and urban markets. Laboratory analysis of bacterial samples took place at International Centre for Diarrhoeal Disease Research , Dhaka, Bangladesh. Laboratory results were recorded on paper-based forms or generated from automated readings, entered into Excel then converted to .csv files for ingestion into the Environmental Information Data Centre. Reference organisms and Clinical and Laboratory Standard Institute (CLSI) guidelines were followed.
File identifier
dda6dd55-f955-4dd5-bc03-b07cc8548a3d XML
Metadata language
EnglishEnglish
Character set
ISO/IEC 8859-1 (also known as Latin 1) 8859 Part 1
Hierarchy level
dataset Dataset
Hierarchy level name
dataset
Date stamp
2025-11-13T16:25:58
Metadata standard name
UK GEMINI
Metadata standard version
2.3
Point of contact
  NERC EDS Environmental Information Data Centre
Lancaster Environment Centre, Library Avenue, Bailrigg , Lancaster , LA1 4AP , UK
https://eidc.ac.uk/
 
 

Overviews

Spatial extent

N
S
E
W
thumbnail


Keywords


Provided by

logo

Share on social sites

Access to the portal
Read here the full details and access to the data.

Associated resources

Not available


  •  
  •  
  •