The dataset contains geochemical measurements which quantify the amount and source of carbon in organic matter of sediments from Lake Paringa, New Zealand. Measurements were made on a 6 m sediment core collected in 2015 from the lake bed using a Mackereth corer (PA6m1a). The core was correlated to master core PA1 which has a well-established age-depth model based on accelerator mass spectrometry measurements of the radiocarbon (14C) content of terrestrial macrofossils (Howarth et al., 2016). In addition, soil samples were collected using a soil auger from two elevation transects in westland, New Zealand in 2016 and 2017 (from Mt. Fox and Alex Knob). All sediment samples were freeze dried and ground to homogenise them prior to geochemical analyses. Organic carbon concentration (%) and the stable isotopic composition of organic carbon (δ13C) was measured (Frith et al., 2018) following the removal of carbonate minerals (0.25 M hydrochloric acid for 4 hours at approximately 70 °C) by combustion of sediment at 1,020 °C in a Costech Elemental Analyser coupled via a CONFLO III to a Thermo Scientific Delta V Advantage stable isotope mass spectrometer. Total nitrogen content (N, %) and its isotopic composition (δ15N) was measured by combustion of untreated samples in a Costech Elemental Analyser with a CARBOSORB trap to inhibit large CO2 peaks from affecting measurements. A subset of samples were selected for analysis of the radiocarbon activity (14C, reported as F14C) of bulk organic matter by accelerator mass spectrometry after graphitization. A subset of sediment samples from the lake core and soil samples were selected for the analysis of biomarker abundance and their hydrogen isotope composition. We focused on the extraction of n-alkanes from aliquots of lake sediment (~2 g) using established methods (Wang et al., 2020). These measurements are reported in the dataset as the abundance of n-alkanes (chain lengths C21 to C35) in ug/g of sediment (and sum of chain lengths and ratios - carbon preference index). Finally, the dataset includes outputs of organic matter provenance: modelled elevation and depth, as described in Wang et al., (2020). In the datafile, the sample elevation and depth are provided. The labels for data are as follows. For down core sediment samples from Lake Paringa, they are labelled with the core code (PA6m1), and the sampling interval in centimetres (PA6m1_x). Soil samples from an elevation transect from Mt Fox (MF-YY-a) are labelled with a distinct code for each site (YY) and sub-code for each soil depth (a). Soil samples from an elevation transect of Alex Knob (5.Z.z) are labelled based on sub-site (Z) and soil depth (z).