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Molecular analysis of Calanus from the Fram Strait 2019

Multidisciplinary field campaigns were carried out in the Fram Strait region during late summer 2019 (JR18007, 04/08/2019 to 28/08/2019) aboard RRS James Clark Ross. A motion-compensated Bongo net fitted with 200 um mesh was deployed at all locations to a maximum depth of 200 m or to within 10 m of the seabed.In the Arctic and sub-Arctic sectors adjacent to the Atlantic, three species of Calanus co-occur. However, their respective core distributions align with different water masses, with Calanus hyperboreus being a high-Arctic oceanic species, C. glacialis being associated with Arctic shelf waters, and C. finmarchicus dominating inflowing Atlantic Water.The proportions of these three species in each deployment was established through molecular analysis of the paired ethanol preserved sample. Subsamples of the ethanol sample were analysed using a 16S ribosomal RNA gene barcode (16SAR, 16SB2R primers) following an adapted protocol. Amplified DNA was sequenced using llumina high-throughput sequencing (HTS) platform. Resultant sequences processed through the Qiime pipeline, clustered into Operational Taxonomic Units at 97% homology and taxonomy was assigned using BLASTn (NCBI).

Funded by UKRI Natural Environment Research Council (NERC; NE/P006213/1, NE/P006353/1, NE/P006302/1, NE/ P005985/1 amongst others).

Simple

Alternate title
Polar Data Centre (PDC) record GB/NERC/BAS/PDC/01858
Date (Publication)
2024-07-03
Identifier
http://www.antarctica.ac.uk/dms/metadata.php?id= / GB/NERC/BAS/PDC/01858
Custodian
  British Antarctic Survey
High Cross, Madingley Road , Cambridge , CB3 0ET , UK
+44 (0)1223 221400
Originator
  British Antarctic Survey - Polar Data Centre
High Cross, Madingley , Cambridge , CB3 0ET , UK
+44 (0)1223 221400
Maintenance and update frequency
unknown Unknown
Keywords
  • NDGO0001
NERC OAI Harvesting
  • NERC_DDC
GCMD Parameter Valids
  • EARTH SCIENCE > Biosphere > Animal Taxonomy > Zooplankton
  • EARTH SCIENCE > Biosphere > Microbiota Taxonomy > Zooplankton
BAS Free-text keywords
  • 16S ribosomal RNA
  • Calanus
  • bongo net
  • zooplankton
Access constraints
otherRestrictions Other restrictions
Metadata language
EnglishEnglish
Topic category
  • Biota
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E
W
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Begin date
unknown
End date
unknown
Reference system identifier
OGP / urn:ogc:def:crs:EPSG::4326
Distribution format
Distributor
  Polar Data Centre - British Antarctic Survey
+44 (0)1223 221400
OnLine resource
GET DATA ( http )
Hierarchy level
dataset Dataset

Domain consistency

Measure identification
INSPIRE / Conformity_001

Conformance result

Date
Explanation
See the referenced specification
Pass
No
Statement
No special comments
File identifier
GB_NERC_BAS_PDC_01858 XML
Metadata language
EnglishEnglish
Hierarchy level
dataset Dataset
Date stamp
2024-07-03
Metadata standard name
NERC profile of ISO19115:2003
Metadata standard version
1.0
Point of contact
  British Antarctic Survey
+44 (0)1223 221400
Dataset URI
http://www.antarctica.ac.uk/dms/metadata.php?id=GB/NERC/BAS/PDC/01858
 
 

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Keywords


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