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Processing and analysis of Arctic Calanus occurrence records from OBIS and GBIF databases

This dataset contains quality-controlled georeferenced occurrence records of three Arctic Calanus species (Calanus finmarchicus, C. glacialis and C. hyperboreus), downloaded from the Ocean Biodiversity Information System (OBIS) and the Global Biodiversity Information Facility (GBIF) databases. Records span about 150 years of sampling (1870-2017), are located between 30 and 90 degrees north, and are distributed between the surface and 5000m deep. Physical (bathymetry) and environmental (temperature and sea-ice concentration) parameters are matched to each occurrence record. An html file provides the annotated source code for the data processing, analyses and figures produced for the publication: Freer JJ and Tarling GA (2023) Assessing key influences on the distribution and life-history of Arctic and boreal Calanus: Are online databases up to the challenge? Front. Mar. Sci. 10:908112.

This work was funded by DIAPOD (NE/P006213/1) and CHASE (NE/R012687/1) projects as part of the Changing Arctic Ocean Programme, with the former funded by the UKRI Natural Environment Research Council (NERC) and the latter, jointly by NERC and the German Federal Ministry of Education and Research (BMBF). Further support was provided by BIOPOLE National Capability Multicentre Round 2 funding from the Natural Environment Research Council (NE/W004933/1).

Simple

Alternate title
Polar Data Centre (PDC) record GB/NERC/BAS/PDC/01723
Date (Publication)
2023-04-04
Identifier
http://www.antarctica.ac.uk/dms/metadata.php?id= / GB/NERC/BAS/PDC/01723
Custodian
  British Antarctic Survey
High Cross, Madingley Road , Cambridge , CB3 0ET , UK
+44 (0)1223 221400
Originator
  NERC EDS UK Polar Data Centre - Freer, J., & Tarling, G.
High Cross, Madingley , Cambridge , CB3 0ET , UK
+44 (0)1223 221400
Maintenance and update frequency
unknown Unknown
Keywords
  • NDGO0001
NERC OAI Harvesting
  • NERC_DDC
GCMD Parameter Valids
  • EARTH SCIENCE > Biosphere > Ecological Dynamics > Biodiversity
  • EARTH SCIENCE > Oceans > Marine Environment Monitoring
BAS Free-text keywords
  • Arctic
  • GBIF
  • OBIS
  • sampling bias
  • winter
  • zooplankton
Use limitation
Data are released under the Open Government Licence V3.0: http://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/.
Access constraints
otherRestrictions Other restrictions
Other constraints
Data are released under the Open Government Licence V3.0: http://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/.
Metadata language
EnglishEnglish
Topic category
  • Biota
  • Environment
  • Oceans
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Begin date
1870-01-01
End date
2017-12-31
Reference system identifier
OGP / urn:ogc:def:crs:EPSG::4326
Distribution format
Distributor
  Polar Data Centre - British Antarctic Survey
+44 (0)1223 221400
Protocol
http
Name
GET DATA
Function
download Download
Hierarchy level
dataset Dataset

Domain consistency

Measure identification
INSPIRE / Conformity_001

Conformance result

Date
Explanation
See the referenced specification
Pass
No
Statement
Data processing steps carried out on the raw downloaded files are outlined in detail in the html file of annotated source code. In brief, records were excluded if they were erroneously located on land, in the Pacific sector or in the southern hemisphere; were not identified to species level; had missing identifiers for month or year of collection. Metadata fields for "sampling protocol" ad "lifestage" were cleaned by re-categorising entries into a condensed set of inputs. Duplicate records were removed as defined by records that had the following identical identifiers: species, longitude, latitude, year, month, day, minimum and maximum collection depth (OBIS), average collection depth (GBIF), life-stage. Lastly, cleaned OBIS and GBIF data were combined into a single dataset and duplicate occurrences between databases were removed using the same identical identifiers listed above. Records where average sample collection depth was greater than bathymetric depth were flagged and removed when creating appropriate figures.
File identifier
GB_NERC_BAS_PDC_01723 XML
Metadata language
EnglishEnglish
Hierarchy level
dataset Dataset
Date stamp
2023-04-04
Metadata standard name
NERC profile of ISO19115:2003
Metadata standard version
1.0
Point of contact
  British Antarctic Survey
+44 (0)1223 221400
Dataset URI
http://www.antarctica.ac.uk/dms/metadata.php?id=GB/NERC/BAS/PDC/01723
 
 

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