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Greenhouse gas exchange, temperatures, bacterial and fungal abundances and the relative abundances of the 40 most frequent bacterial taxa in a soil warming and irrigation experiment on Svalbard

Data on CO2 and CH4 exchange rates between soil and atmosphere, soil temperatures, bacterial 16S ribosomal RNA genes, fungal internal transcribed spacer 2 (ITS2) copies and the relative abundances of the 40 most abundant bacterial taxa in the 48 plots of a soil warming and irrigation experiment on Svalbard in the High Arctic.

On 2014-09-10, a soil warming and irrigation experiment was set up at Kongsfjordneset on the Brogger Peninsula, Svalbard. Warming was applied continuously with open top chambers and the irrigation treatment was applied in mid-late June and late August each year. Greenhouse gas exchange between the soil and atmosphere was measured on 2018-08-23 and 2018-08-26. At this time, soil samples were taken for DNA analyses and the amount of bacterial and fungal DNA present in soil was measured. The 40 most frequent bacterial operational taxonomic units were also determined.

This project was funded by UK Natural Environment Research Council (core funding to the British Antarctic Survey), the Danish National Research Foundation (CENPERM DNRF100) and Seoul National University.

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Date (Creation)
2022-09-14
Date (Revision)
2022-09-14
Date (Publication)
2022-09-14
Date (released)
2022-09-14
Edition
1
Unique resource identifier
https://doi.org/10.5285/71dfd312-a493-42fc-822a-29f3dca66dc0
Codespace
doi
Unique resource identifier
GB/NERC/BAS/PDC/01668
Codespace
https://data.bas.ac.uk/
Other citation details
Please cite this item as: https://doi.org/jd4g
Credit
No credit.
Status
completed Completed
Author
  British Antarctic Survey - Newsham, Kevin ( Researcher )
Author
  Center for Permafrost - Danielsen, Birgitte ( Researcher )
Author
  British Antarctic Survey - Biersma, Elisabeth ( Researcher )
Author
  Center for Permafrost - Elberling, Bo ( Researcher )
Author
  British Antarctic Survey - Hillyard, Guy ( Researcher )
Author
  Seoul National University - Kumari, Priyanka ( Researcher )
Author
  Center for Permafrost and Department of Biology - Prieme, Anders ( Researcher )
Author
  Seoul National University - Woo, Cheolwoon ( Researcher )
Author
  Seoul National University - Yamamoto, Naomichi ( Researcher )
Point of contact
  NERC EDS UK Polar Data Centre
British Antarctic Survey, High Cross, Madingley Road , Cambridge , Cambridgeshire , CB3 0ET , United Kingdom
+44 (0)1223 221400
https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/
Maintenance and update frequency
asNeeded As needed
Maintenance note
completed Completed
Global Change Master Directory (GCMD) Science Keywords
  • EARTH SCIENCE > Atmosphere > Atmospheric Chemistry/Carbon and Hydrocarbon Compounds > Carbon Dioxide
  • EARTH SCIENCE > Atmosphere > Atmospheric Chemistry/Carbon and Hydrocarbon Compounds > Methane
  • EARTH SCIENCE > Biosphere > Microbiota Taxonomy > Bacteria
  • EARTH SCIENCE > Biosphere > Fungi
Theme
  • Svalbard
  • carbon dioxide
  • climate change
  • cryoturbation
  • frost boils
  • greenhouse gases
  • methane
  • non-sorted circles
  • soil bacteria
  • soil fungi
Place
  • Kongsfjordneset, Brøgger Peninsula Svalbard
GEMET - INSPIRE themes, version 1.0
  • Atmospheric conditions
  • Habitats and biotopes
Access constraints
otherRestrictions Other restrictions
Other constraints
no limitations to public access
Access constraints
otherRestrictions Other restrictions
Other constraints
no limitations
Use constraints
license License
Other constraints
This dataset is supplied under the Open Government Licence v3.0: https://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/
Use constraints
otherRestrictions Other restrictions
Other constraints
No restrictions apply.
Unique resource identifier
doi
Codespace
doi
Association Type
crossReference Cross reference
Unique resource identifier
url
Codespace
url
Association Type
crossReference Cross reference
Spatial representation type
textTable Text, table
Metadata language
engEnglish
Character set
utf8 UTF8
Topic category
  • Biota
  • Environment
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Begin date
2014-09-19
End date
2018-08-27
Supplemental Information
It is recommended that careful attention be paid to the contents of any data, and that the author be contacted with any questions regarding appropriate use. If you find any errors or omissions, please report them to polardatacentre@bas.ac.uk.
Date (Publication)
2008-11-12
Publisher
  European Petroleum Survey Group
https://www.epsg-registry.org/
Unique resource identifier
urn:ogc:def:crs:EPSG::3031
Version
6.18.3

Distributor

Distributor
  NERC EDS UK Polar Data Centre
British Antarctic Survey, High Cross, Madingley Road , Cambridge , Cambridgeshire , CB3 0ET , United Kingdom
+44 (0)1223 221400
https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/
Units of distribution
bytes
Transfer size
1
OnLine resource
Get Data ( WWW:LINK-1.0-http--link )

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dataset Dataset
Statement

Methodology:

On 2014-09-10, a soil warming and irrigation experiment was set up at Kongsfjordneset on the Brogger Peninsula, Svalbard. It consists of 48 plots centred on individual frost boils treated with a factorial combination of warming with open top chambers and irrigation. The experimental design results in four OTC-irrigation treatments, each replicated 12 times across three blocks. The OTCs have a basal diameter of 1.04 m. The irrigation treatment consisted of applying 1 L of deionised water to 24 of the frost boils in mid-late June and late August each year, simulating c. 20 mm rainfall events.

Frost boil temperatures were monitored by burying Tinytag Plus 2 loggers in soil in four chambered and four unchambered plots. The loggers recorded temperatures at a depth of 30-35 mm between 2014-09-10 and 2018-08-27. They were replaced yearly with newly calibrated units. Measurements recorded between September 2017 and August 2018 by two loggers that had become exposed at the soil surface in summer 2018 were deleted from the dataset.

Gas exchange between the soil and atmosphere was measured twice in each of the 48 frost boils, on 2018-08-23 and 2018-08-26, using a closed loop system and a Piccaro Gas Analyzer. The analyzer was attached to a transparent polycarbonate chamber equipped with fans for air circulation seated on stainless steel frames that had been hammered into the soil in each boil on 2018-06-30. Gutters filled with water around each frame ensured an airtight seal. The chamber was covered with dark cloth to eliminate photosynthetically active radiation during the measurements. CO2 and CH4 exchange was measured over a period of 5 min. The fluxes of both gases were calculated by fitting 2nd order polynomial models to changes in gas concentrations over time. In order to avoid bias associated with the initial stabilization period and saturation towards the end of the measurements, only data measured from 50-250 sec were included in these calculations, and gas fluxes were calculated from slopes taken 100 sec after the start of each measurement.

The copy number of bacterial 16S ribosomal RNA genes in DNA extracts from frost boil soil was measured in 20 µl reactions, consisting of 0.8 µl of each of the primers 341F (5'-CCTAYGGGRBGCASCAG-3') and 806R (5'-GGACTACHVGGGTWTCTAAT-3'),10 µl of 2 x qPCRBIO SyGreen Blue Mix Lo-ROX (PCR Biosystems Inc., Wayne, PA, USA), 2 µl of sample (diluted 10 times to avoid inhibition of PCR) and 6.4 µl of H2O. The PCR mixes were heated to 95 °C for 180 sec, and then subjected to 45 cycles of 95 °C for 5 sec and a final melt at 60 °C for 30 sec on LightCycler® 96 real-time PCR instrument. Fungal ITS2 copy numbers were measured in the same way, but with 0.8 µl of each of the primers ITS4 (5'-TTCCTSCGCTTATTGATATGC-3') and ITS7 (5'-GTGARTCATCGARTCTTTG-3') in 20 µl reactions. The measurements from one sample, for which the copy numbers of bacterial 16S ribosomal RNA genes and fungal ITS2 regions were 2-3 orders of magnitude lower than the other 47 samples, were deleted from the dataset. Copy numbers were expressed per g dry weight of soil (105 °C for 18 h).

DNA extracted from soil was suspended in 50 µl of Tris-EDTA buffer. A universal eubacterial primer set, 331F (5'-TCCTACGGGAGGCAGCAGT-3')/ 797R (5'-GGACTACCAGGGTATCTAATCCTGTT-3'), was used to amplify V3-V4 hypervariable regions of the 16S ribosomal RNA gene with MiSeq adapters. Each PCR was carried out in a 50 µl reaction volume containing 2 x Premix Taq, 1 µM of each primer and 1 µl of DNA extract. PCR amplification was performed in a BioRad T100 thermal cycler with an initial denaturation step at 95 °C for 5 min, followed by 35 cycles of denaturation for 15 sec at 95 °C, annealing for 45 sec at 56 °C and elongation for 90 sec at 72 °C, and a final elonga...(20)

Data collection:

Equipment

Soil temperatures: Tinytag Plus 2 loggers (TGP-4017, Gemini Data Loggers Ltd., Chichester, UK)

Greenhouse gas exchange: Piccaro Gas Analyzer (Picarro G4301, Santa Clara, CA, USA)

Q-PCR assays: LightCycler 96 real-time PCR instrument (Roche Life Science, Hvidovre, Denmark)

PCR amplification: BioRad T100 thermal cycler (Bio-Rad Laboratories, Inc., Hercules, CA, USA)

DNA barcoding: Illumina MiSeq sequencer (Illumina, Inc., San Diego, CA, USA)

Software

Trimmomatic version v. 0.35

mothur v1.40.5

Data quality:

Temperature data are the means derived from loggers in four unchambered plots and in four chambered plots.

Gas exchange data are means of two measurements taken from each plot on 2018-08-23 and 2018-08-26.

Missing data are indicated by NA.

File identifier
71dfd312-a493-42fc-822a-29f3dca66dc0 XML
Metadata language
engEnglish
Character set
utf8 UTF8
Hierarchy level
dataset Dataset
Hierarchy level name
dataset
Date stamp
2022-09-14
Metadata standard name
ISO 19115 Geographic Information - Metadata
Metadata standard version
ISO 19115:2003(E)
Point of contact
  NERC EDS UK Polar Data Centre
British Antarctic Survey, High Cross, Madingley Road , Cambridge , Cambridgeshire , CB3 0ET , United Kingdom
+44 (0)1223 221400
https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/
 
 

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Keywords

Svalbard carbon dioxide climate change cryoturbation frost boils greenhouse gases methane non-sorted circles soil bacteria soil fungi
GEMET - INSPIRE themes, version 1.0
Atmospheric conditions Habitats and biotopes
Global Change Master Directory (GCMD) Science Keywords
EARTH SCIENCE > Atmosphere > Atmospheric Chemistry/Carbon and Hydrocarbon Compounds > Carbon Dioxide EARTH SCIENCE > Atmosphere > Atmospheric Chemistry/Carbon and Hydrocarbon Compounds > Methane EARTH SCIENCE > Biosphere > Fungi EARTH SCIENCE > Biosphere > Microbiota Taxonomy > Bacteria

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