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Digital 3D models and measurements of avian brain cavity, blood vessel and nerve endocasts

This dataset comprises cast reconstructions of brain cavity space in 60 extant avian species, derived from X-ray micro computed-tomography scan image stacks. Each reconstruction was made using Materialise Mimics 14.11 to create volumetric models (brain cavity casts) that were then transformed into the polygon mesh stereolithograph (STL) files archived here. Brain cavity cast models are in most cases accompanied by casts of main vascular features (e.g., carotid arteries) and the olfactory nerves (CN I). A data file (Data_TableComma Separated Values) based on values reported in Table 1 of Walsh et al. (2013: doi:10.1371/journal.pone.0067176) is included that records volume values used in the original analysis, and coding of cerebellar flocculus morphology. Full details about this nonGeographicDataset can be found at https://doi.org/10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b

Simple

Date (Publication)
2013-06-25
Identifier
doi: / 10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b
Identifier
https://catalogue.ceh.ac.uk/id/4e15f483-5b05-409e-acc0-5117fc24e90b
Other citation details
Walsh, S.A., Iwaniuk, A.N., Knoll, M.A., Bourdon, E., Barrett, P.M., Milner, A., Nudds, R., Abel, R.L., Dello Sterpaio, P. (2013). Digital 3D models and measurements of avian brain cavity, blood vessel and nerve endocasts. NERC Environmental Information Data Centre 10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b
Point of contact
  National Museums Scotland - Walsh, S.
Author
  National Museums Scotland - Walsh, S.A.
Author
  University of Lethbridge - Iwaniuk, A.N.
Author
  University of the West of Scotland - Knoll, M.A.
Author
  The Natural History Museum - Bourdon, E.
Author
  The Natural History Museum - Barrett, P.M.
Author
  The Natural History Museum - Milner, A.
Author
  University of Manchester - Nudds, R.
Author
  Imperial College London - Abel, R.L.
Author
  University of Abertay - Dello Sterpaio, P.
Custodian
  NERC EDS Environmental Information Data Centre
Publisher
  NERC Environmental Information Data Centre
Maintenance and update frequency
notPlanned Not planned
Access constraints
otherRestrictions Other restrictions
Other constraints
no limitations
Use constraints
otherRestrictions Other restrictions
Other constraints
This resource is made available under the terms of the Open Government Licence
Use constraints
otherRestrictions Other restrictions
Other constraints
© Natural Environment Research Council
Use constraints
otherRestrictions Other restrictions
Other constraints
When reusing these data please cite Walsh, S. A., Iwaniuk, A. N., Knoll M. A., Bourdon, E., Barrett, P. M., Milner, A. C., Nudds, R., Abel, R. L. and Dello Sterpaio, P. 2013. Avian cerebellar floccular fossa size is not a proxy for flying ability in birds. PLoS ONE, 8(6), e67176.
Use constraints
otherRestrictions Other restrictions
Other constraints
If you reuse this data, you should cite: Walsh, S.A., Iwaniuk, A.N., Knoll, M.A., Bourdon, E., Barrett, P.M., Milner, A., Nudds, R., Abel, R.L., Dello Sterpaio, P. (2013). Digital 3D models and measurements of avian brain cavity, blood vessel and nerve endocasts. NERC Environmental Information Data Centre https://doi.org/10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b
Metadata language
EnglishEnglish
Character set
utf8 UTF8
Topic category
  • Biota
Begin date
2010-09-01
End date
2012-03-01
Distribution format
  • STL ()

  • Comma-separated values (CSV) ()

Distributor
  NERC EDS Environmental Information Data Centre
OnLine resource
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Hierarchy level
nonGeographicDataset Non geographic dataset
Other
nonGeographicDataset

Conformance result

Date (Publication)
2010-12-08
Statement
Data were collected from avian osteological specimens held in the collections of National Museums Scotland, Edinburgh, and the Natural History Museum, London. These data were derived from X-ray micro-CT scans conducted using Nikon Metrology HMX ST 225 scanners at the University of Abertay, Dundee and the Natural History museum at resolutions of 12-149 µm. Voxel segmentation of brain cavity casts was conducted using Materialise Mimics 14.11 by two team members and volume values collected from these segmentations.
File identifier
4e15f483-5b05-409e-acc0-5117fc24e90b XML
Metadata language
EnglishEnglish
Character set
ISO/IEC 8859-1 (also known as Latin 1) 8859 Part 1
Hierarchy level
nonGeographicDataset Non geographic dataset
Hierarchy level name
nonGeographicDataset
Date stamp
2025-03-21T13:20:43
Metadata standard name
UK GEMINI
Metadata standard version
2.3
Point of contact
  NERC EDS Environmental Information Data Centre
Lancaster Environment Centre, Library Avenue, Bailrigg , Lancaster , LA1 4AP , UK
https://eidc.ac.uk/
 
 

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