Digital 3D models and measurements of avian brain cavity, blood vessel and nerve endocasts
This dataset comprises cast reconstructions of brain cavity space in 60 extant avian species, derived from X-ray micro computed-tomography scan image stacks. Each reconstruction was made using Materialise Mimics 14.11 to create volumetric models (brain cavity casts) that were then transformed into the polygon mesh stereolithograph (STL) files archived here. Brain cavity cast models are in most cases accompanied by casts of main vascular features (e.g., carotid arteries) and the olfactory nerves (CN I). A data file (Data_TableComma Separated Values) based on values reported in Table 1 of Walsh et al. (2013: doi:10.1371/journal.pone.0067176) is included that records volume values used in the original analysis, and coding of cerebellar flocculus morphology. Full details about this nonGeographicDataset can be found at
https://doi.org/10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b
Simple
- Date (Publication)
- 2013-06-25
- Identifier
- doi: / 10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b
- Other citation details
- Walsh, S.A., Iwaniuk, A.N., Knoll, M.A., Bourdon, E., Barrett, P.M., Milner, A., Nudds, R., Abel, R.L., Dello Sterpaio, P. (2013). Digital 3D models and measurements of avian brain cavity, blood vessel and nerve endocasts. NERC Environmental Information Data Centre 10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b
- Maintenance and update frequency
- notPlanned Not planned
- Access constraints
- otherRestrictions Other restrictions
- Other constraints
- no limitations
- Use constraints
- otherRestrictions Other restrictions
- Use constraints
- otherRestrictions Other restrictions
- Other constraints
- © Natural Environment Research Council
- Use constraints
- otherRestrictions Other restrictions
- Other constraints
- When reusing these data please cite Walsh, S. A., Iwaniuk, A. N., Knoll M. A., Bourdon, E., Barrett, P. M., Milner, A. C., Nudds, R., Abel, R. L. and Dello Sterpaio, P. 2013. Avian cerebellar floccular fossa size is not a proxy for flying ability in birds. PLoS ONE, 8(6), e67176.
- Use constraints
- otherRestrictions Other restrictions
- Other constraints
- If you reuse this data, you should cite: Walsh, S.A., Iwaniuk, A.N., Knoll, M.A., Bourdon, E., Barrett, P.M., Milner, A., Nudds, R., Abel, R.L., Dello Sterpaio, P. (2013). Digital 3D models and measurements of avian brain cavity, blood vessel and nerve endocasts. NERC Environmental Information Data Centre https://doi.org/10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b
- Metadata language
- EnglishEnglish
- Character set
- utf8 UTF8
- Topic category
-
- Biota
- Begin date
- 2010-09-01
- End date
- 2012-03-01
- Distribution format
-
-
STL
()
-
Comma-separated values (CSV)
()
-
STL
()
- OnLine resource
-
Download the data
Download a copy of this data
- OnLine resource
-
Supporting information
Supporting information available to assist in re-use of this dataset.
- Hierarchy level
- nonGeographicDataset Non geographic dataset
- Other
- nonGeographicDataset
Conformance result
- Date (Publication)
- 2010-12-08
- Statement
- Data were collected from avian osteological specimens held in the collections of National Museums Scotland, Edinburgh, and the Natural History Museum, London. These data were derived from X-ray micro-CT scans conducted using Nikon Metrology HMX ST 225 scanners at the University of Abertay, Dundee and the Natural History museum at resolutions of 12-149 µm. Voxel segmentation of brain cavity casts was conducted using Materialise Mimics 14.11 by two team members and volume values collected from these segmentations.
- File identifier
- 4e15f483-5b05-409e-acc0-5117fc24e90b XML
- Metadata language
- EnglishEnglish
- Character set
- ISO/IEC 8859-1 (also known as Latin 1) 8859 Part 1
- Hierarchy level
- nonGeographicDataset Non geographic dataset
- Hierarchy level name
- nonGeographicDataset
- Date stamp
- 2025-03-21T13:20:43
- Metadata standard name
- UK GEMINI
- Metadata standard version
- 2.3
Point of contact
NERC EDS Environmental Information Data Centre
Lancaster Environment Centre, Library Avenue, Bailrigg
,
Lancaster
,
LA1 4AP
,
UK
https://eidc.ac.uk/