NERC Data Catalogue Service
Operational taxonomic units for soil bacteria in the Wolf and Tamar catchments
Default
Identification info
- Metadata Language
- English (en)
- Character set
- utf8
- Dataset Reference Date ()
- 2014-05-06
- Identifier
- CEH:EIDC: / 1395928628829
- Identifier
- doi: / 10.5285/296ded8e-2c80-4a01-98cc-e71e3fa3fa1b
- Other citation details
- Griffiths, R., Pywell, R.F., Peyton, J., Nuttall, P., Sarlej, R., Thomson, B. (2014). Operational taxonomic units for soil bacteria in the Wolf and Tamar catchments. NERC Environmental Information Data Centre 10.5285/296ded8e-2c80-4a01-98cc-e71e3fa3fa1b
- Maintenance and update frequency
- unknown
- Maintenance note
- not planned
- Keywords
-
- microbiology
- genetic information
- Tellus
- South West project
- Limitations on Public Access
- otherRestrictions
- Other constraints
- no limitations
- Use constraints
- otherRestrictions
- Use constraints
- otherRestrictions
- Other constraints
- © UK Centre for Ecology & Hydrology
- Use constraints
- otherRestrictions
- Other constraints
- If you reuse this data, you should cite: Griffiths, R., Pywell, R.F., Peyton, J., Nuttall, P., Sarlej, R., Thomson, B. (2014). Operational taxonomic units for soil bacteria in the Wolf and Tamar catchments. NERC Environmental Information Data Centre https://doi.org/10.5285/296ded8e-2c80-4a01-98cc-e71e3fa3fa1b
- Spatial representation type
- textTable
- Topic category
-
- Biota
- Environment
- Inland waters
- Location
))
- Begin date
- 2013-10-01
- End date
- 2014-03-20
Distribution Information
- Data format
-
-
Comma-separated values (CSV)
()
-
Comma-separated values (CSV)
()
- Resource Locator
-
Supporting Information
Supporting information available to assist in re-use of this dataset
- Resource Locator
-
Download the data
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- Resource Locator
-
Supporting Information
Supporting information available to assist in re-use of this dataset
- Resource Locator
-
Download the data
Get a copy of this data
- Quality Scope
- dataset
- Other
- dataset
Report
- Dataset Reference Date ()
- 2010-12-08
- Statement
- Epilithon (water samples): Approximate location of sampling sites was determined from maps to provide good spatial coverage of the Wold River through to the Tamar River. Exact sites were determined in the field, considering accessibility and other logistics. The exact location of each sample site was determined using a Garmin GPS12. Three stones were taken from each of the 20 locations and epilithon removed from a defined area. Samples were kept in the cold and removed to the laboratory for analyses. DNA was extracted from all soil and epilithon samples using the MOBIO Powersoil 96 well DNA extraction kit. DNA was quality checked for purity and yield prior to submission for 454 pyrosequencing to assess both bacterial and eukaryotic biodiversity within each sample. Following bioinformatic sequence processing, sequencing were clustered into operational taxonomic units (OTU) and the data tables display the percentage of each OTU within each sample.
Metadata
- File identifier
- 296ded8e-2c80-4a01-98cc-e71e3fa3fa1b XML
- Metadata Language
- English (en)
- Character set
- ISO/IEC 8859-1 (also known as Latin 1)
- Resource type
- dataset
- Hierarchy level name
- dataset
- Metadata Date
- 2022-05-20T10:41:32
- Metadata standard name
- UK GEMINI
- Metadata standard version
- 2.3
