Abundance of airborne pollen for nine grass species, measured by qPCR, UK, 2016-2017
The dataset contains abundance data of airborne pollen (including Anthoxanthum odoratum (sweet vernal-grass), Arrhenatherum elatius (false oat-grass), Cynosurus cristatus (crested dog's-tail), Dactylis glomerata (cock's-foot), Lolium perenne (perennial ryegrass), Phleum pratense (Timothy), Poa pratensis (smooth meadow-grass), grass species within the genera Alopecurus/Agrostis, and one probe that was found to be degenerate and unable to discriminate grass species. Here we used qPCR to track the seasonal progression of airborne grass pollen, in time and space. To do this we collected aerial samples from thirteen sites across the UK during the pollen seasons (May to September) of 2016 and 2017. Full details about this dataset can be found at
https://doi.org/10.5285/28208be4-0163-45e6-912c-2db205126925
Simple
- Date (Publication)
- 2020-12-15
- Identifier
- doi: / 10.5285/28208be4-0163-45e6-912c-2db205126925
- Other citation details
- Brennan, G., Creer, S., Griffith, G. (2020). Abundance of airborne pollen for nine grass species, measured by qPCR, UK, 2016-2017. NERC Environmental Information Data Centre 10.5285/28208be4-0163-45e6-912c-2db205126925
- GEMET - INSPIRE themes, version 1.0
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- Environmental Monitoring Facilities
- Access constraints
- otherRestrictions Other restrictions
- Other constraints
- no limitations
- Use constraints
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- Use constraints
- otherRestrictions Other restrictions
- Other constraints
- If you reuse this data, you should cite: Brennan, G., Creer, S., Griffith, G. (2020). Abundance of airborne pollen for nine grass species, measured by qPCR, UK, 2016-2017. NERC Environmental Information Data Centre https://doi.org/10.5285/28208be4-0163-45e6-912c-2db205126925
- Spatial representation type
- textTable Text, table
- Distance
- 1 urn:ogc:def:uom:EPSG::9001
- Metadata language
- EnglishEnglish
- Character set
- utf8 UTF8
- Topic category
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- Biota
- Begin date
- 2016-05-01
- End date
- 2017-09-30
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E
W
- Unique resource identifier
- WGS 84 / Pseudo-Mercator
- Distribution format
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Comma-separated values (CSV)
()
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Comma-separated values (CSV)
()
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Supporting information
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- Hierarchy level
- dataset Dataset
- Other
- dataset
Conformance result
- Date (Publication)
- 2010-12-08
- Statement
- The qPCR data was collected using a QuantStudio 6 Flex Real-Time qPCR machine (ThermoFisher Scientific). Species-specific primers were designed to target the ITS2 region of abundant grass species in the UK including Anthoxanthum odoratum (sweet vernal-grass), Arrhenatherum elatius (false oat-grass), Cynosurus cristatus (crested dog's-tail), Dactylis glomerata (cock's-foot), Lolium perenne (perennial ryegrass), Phleum pratense (Timothy), Poa pratensis (smooth meadow-grass), grass species within the genera Alopecurus/Agrostis, and one probe that was found to be degenerate and unable to discriminate grass species. Of 1,400 daily aerial samples, 1,210 were selected for downstream molecular analysis. Samples were excluded if pollen could not be reliably extracted due to large volumes of rainwater in collection tubes. Quantitative PCR runs with PCR efficiencies less than 85% and greater than 115% were not used for further analysis (efficiency of qPCR data used in downstream analysis ranged between 88.5% and 106%). Data points with a large standard deviation between three technical replicates (>6.95, based on the upper quartile range of the data) were removed. In addition, samples which amplified before 10 cycles and after 38 cycles were removed to reduce the chance of detecting false positive or false negative amplification respectively. The reliability of the data was evaluated based on the positive and negative controls.
- File identifier
- 28208be4-0163-45e6-912c-2db205126925 XML
- Metadata language
- EnglishEnglish
- Character set
- ISO/IEC 8859-1 (also known as Latin 1) 8859 Part 1
- Hierarchy level
- dataset Dataset
- Hierarchy level name
- dataset
- Date stamp
- 2025-11-13T16:19:15
- Metadata standard name
- UK GEMINI
- Metadata standard version
- 2.3
Point of contact
NERC EDS Environmental Information Data Centre
Lancaster Environment Centre, Library Avenue, Bailrigg
,
Lancaster
,
LA1 4AP
,
UK
https://eidc.ac.uk/
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NERC Data Catalogue Service