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Vertical luminophore particle tracer profiles expressed as relative counts for replicate macrofaunal communities from the Western Barents Sea in summer 2017 and 2018

Macrofaunal mediated redistribution of optically distinct particulate tracers (luminophores) for intact communities from the western Barents Sea after 12 days incubation. Tracer profiles are quantified from stitched composite images of all four sides of each aquarium taken using a digital SLR camera housed within a UV illuminated imaging box. Counts are expressed as relative counts (proportion of the total). Samples were collected on cruises JR16006 and JR17007.

Funding was provided by 'The Changing Arctic Ocean Seafloor (ChAOS) - how changing sea ice conditions impact biological communities, biogeochemical processes and ecosystems' project (NE/N015894/1 and NE/P006426/1, 2017-2021), part of the NERC funded Changing Arctic Ocean programme.

Simple

Date (Creation)
2020-07-24
Date (Revision)
2020-07-24
Date (Publication)
2020-07-24
Date (released)
2020-07-24
Edition
1.0
Unique resource identifier
https://doi.org/10.5285/260b15b1-f814-4941-84cd-9cd94f386f33
Codespace
doi
Unique resource identifier
GB/NERC/BAS/PDC/01370
Codespace
https://data.bas.ac.uk/
Unique resource identifier
NE/N015894/1
Codespace
award
Unique resource identifier
NE/P006426/1
Codespace
award
Other citation details
Please cite this item as: Solan, M., Godbold, J., Grange, L., Ward, E., Wood, C., & Reed, A. (2020). Vertical luminophore particle tracer profiles expressed as relative counts for replicate macrofaunal communities from the Western Barents Sea in summer 2017 and 2018 (Version 1.0) [Data set]. UK Polar Data Centre, Natural Environment Research Council, UK Research & Innovation. https://doi.org/10.5285/260b15b1-f814-4941-84cd-9cd94f386f33
Credit
No credit.
Status
completed Completed
Author
  University of Southampton - Solan, Martin ( Researcher )
Author
  University of Southampton - Godbold, Jasmin ( Researcher )
Author
  Bangor University - Grange, Laura ( Researcher )
Author
  University of Southampton - Ward, Ellie Rose ( Researcher )
Author
  University of Southampton - Wood, Christina ( Researcher )
Author
  University of Southampton - Reed, Adam ( Researcher )
Point of contact
  NERC EDS UK Polar Data Centre
British Antarctic Survey, High Cross, Madingley Road , Cambridge , Cambridgeshire , CB3 0ET , United Kingdom
+44 (0)1223 221400
https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/
Maintenance and update frequency
asNeeded As needed
Maintenance note
completed Completed
Global Change Master Directory (GCMD) Science Keywords
  • EARTH SCIENCE > Biosphere > Aquatic Habitat > Benthic Habitat
  • EARTH SCIENCE > Oceans > Marine Sediments > Bioturbation
  • EARTH SCIENCE > Oceans > Marine Sediments > Sedimentary Structures
Theme
  • biodiffusion coefficient
  • bioturbation
  • bioturbation coefficient
  • particle reworking
  • sediment profile imaging
Place
  • Western Barents Sea Arctic
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
  • Oceanographic geographical features
Access constraints
otherRestrictions Other restrictions
Other constraints
no limitations to public access
Access constraints
otherRestrictions Other restrictions
Other constraints
no limitations
Use constraints
license License
Other constraints
Open Government Licence v3.0
Use constraints
otherRestrictions Other restrictions
Other constraints
This data is governed by the NERC Data Policy: https://www.ukri.org/who-we-are/nerc/our-policies-and-standards/nerc-data-policy/
Use constraints
otherRestrictions Other restrictions
Other constraints
This data is governed by the NERC data policy and supplied under Open Government Licence v.3
Use constraints
otherRestrictions Other restrictions
Other constraints
No restrictions apply.
Unique resource identifier
url
Codespace
url
Association Type
largerWorkCitation Larger work citation
Unique resource identifier
url
Codespace
url
Association Type
crossReference Cross reference
Spatial representation type
textTable Text, table
Metadata language
engEnglish
Character set
utf8 UTF8
Topic category
  • Geoscientific information
  • Oceans
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Begin date
2017-07-22
End date
2017-08-01
Supplemental Information
It is recommended that careful attention be paid to the contents of any data, and that the author be contacted with any questions regarding appropriate use. If you find any errors or omissions, please report them to polardatacentre@bas.ac.uk.
Date (Publication)
2008-11-12
Publisher
  European Petroleum Survey Group
https://www.epsg-registry.org/
Unique resource identifier
urn:ogc:def:crs:EPSG::3031
Version
6.18.3

Distributor

Distributor
  NERC EDS UK Polar Data Centre
British Antarctic Survey, High Cross, Madingley Road , Cambridge , Cambridgeshire , CB3 0ET , United Kingdom
+44 (0)1223 221400
https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/
Name
text/plain
Name
text/csv
Units of distribution
bytes
Transfer size
314470
OnLine resource
Get Data ( WWW:LINK-1.0-http--link )

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OnLine resource
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dataset Dataset
Statement

Methodology:

Data were collected from each of 5 stations in 2017 (B13-B17) and 6 stations in 2018 (B13-B17 and Xs) during two consecutive cruises (RRS James Clark Ross: JR16006, 30th June to 8th August, 2017; JR17007: 10th July to 5th August, 2018) following a transect along the 30ºE meridian. At each station four replicate intact sediment cores (LWH: 20 x 20 x 12 cm) were obtained from replicate 0.1m2 USNL (Unites States Naval Laboratory) box cores using a core extruder, transferred to transparent acrylic aquaria (internal dimensions, LWH: 20 x 20 x 34 cm) and overlain with ~8 L (20cm depth) surface seawater (salinity, ~34). Aquaria (2017, n = 20; 2018, n = 24) were randomly transferred to one of two insulated fibreglass seawater baths (LWH: 1.2 x 1.2 x 0.8m, Tanks Direct, UK) and maintained at a representative ambient bottom temperature in the dark. Faunal mediated sediment particle reworking was estimated by establishing the redistribution of optically distinct particulate tracers (luminophores: 215g aquaria-1, fluorescent green, <200µm silica sand, density 2.35 kg dm-3; Glass Pebbles Ltd., UK). Luminophores were evenly distributed across the sediment surface immediately after the partial seawater change. After 12 days, the redistribution of luminophores was quantified from stitched composite images (RGB colour, JPEG compression) of all four sides of each aquarium taken using a digital SLR camera (Canon 400D: 2017, 10 s exposure, f5.6 aperture, ISO 400, 83 µm pixel-1; 2018, 10 s exposure, f5.6 aperture, ISO 800, 74 µm pixel-1) housed within a UV illuminated imaging box. Extracted profile data was obtained using a custom-made semi-automated macro that runs in ImageJ (version 1.47s, released 3rd June, 2013), a java-based public domain program developed at the US National Institutes of Health (http://rsb.info.nih.gov/ij/index.html).

Resolution:

Counts were extracted from digital images, realised camera resolution of 83 µm pixel-1 in 2017 and 74 µm pixel-1 in 2018.

Data collection:

Software: ImageJ (version 1.47s)

Data quality:

Counts were extracted from digital images with a resolution of 83 µm pixel-1 in 2017 and 74 µm pixel-1 in 2018. Images were cleaned using Adobe Photoshop CS6 to remove highly reflective dust particles, cloth filaments or other non-luminophore pixels.

Relative counts are calculated from stitched images of 4 sides of an aquarium except for stations B13 (aquarium #2), B14 (aquarium #4) and B15 (aquarium #3) in 2017 which were calculated from 3 sides of an aquarium following an unrecoverable file corruption on a subset of images during transfer.

File identifier
260b15b1-f814-4941-84cd-9cd94f386f33 XML
Metadata language
engEnglish
Character set
utf8 UTF8
Hierarchy level
dataset Dataset
Hierarchy level name
dataset
Date stamp
2020-07-24
Metadata standard name
ISO 19115 Geographic Information - Metadata
Metadata standard version
ISO 19115:2003(E)
Point of contact
  NERC EDS UK Polar Data Centre
British Antarctic Survey, High Cross, Madingley Road , Cambridge , Cambridgeshire , CB3 0ET , United Kingdom
+44 (0)1223 221400
https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/
 
 

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Keywords

biodiffusion coefficient bioturbation bioturbation coefficient particle reworking sediment profile imaging
GEMET - INSPIRE themes, version 1.0
Habitats and biotopes Oceanographic geographical features
Global Change Master Directory (GCMD) Science Keywords
EARTH SCIENCE > Biosphere > Aquatic Habitat > Benthic Habitat EARTH SCIENCE > Oceans > Marine Sediments > Bioturbation EARTH SCIENCE > Oceans > Marine Sediments > Sedimentary Structures

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