Data comprise sub-hourly discharge measurements including mean stream height, discharge and stream temperature collected at station S2 on the Siksik stream, North West Territories, Canada, between September 2009 and March 2010. Measurements were taken at a field site based at SikSik Creek a small sub-catchment of the Trail Valley Creek, approximately 60km north of Inuvik. The data were collected under Project HYDRA, a NERC funded UK research project linking Heriot Watt University, the Universities of Durham, Aberdeen and Stirling, and the Centre for Ecology & Hydrology (CEH), Edinburgh. Project HYDRA is part of the UK Arctic Research Programme. Project HYDRA studies sites in Arctic Canada to investigate the biological, chemical and physical controls on the release of greenhouse gases from permafrost into melt water and to the atmosphere and how these emissions will influence global warming. Full details about this dataset can be found at https://doi.org/10.5285/1ee887d3-aabd-4fb7-b48e-056229a15c6f