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Pseudogymnoascus roseus in soil at Mars Oasis, Alexander Island, under different temperature, irrigation and substrate treatments

This dataset consists of field measurements of Pseudogymnoascus roseus DNA concentrations in soil and three edaphic factors (soil temperature, water potential and snow depth) at Mars Oasis, Alexander Island, from 2009 to 2012, under different temperature, irrigation and substrate (glucose, glycine and tryptone soy broth) treatments. Laboratory measurements of hyphal extension rates, conidial germination, numbers of conidia produced per colony of fungus and specific enzyme activities of three P. roseus isolates are also included.

Simple

Date (Creation)
2020-05-27
Date (Revision)
2020-05-27
Date (Publication)
2020-05-27
Date (released)
2020-05-27
Edition
1.0
Unique resource identifier
https://doi.org/10.5285/1cf37889-9f77-41b9-8c49-b175fbd03406
Codespace
doi
Unique resource identifier
GB/NERC/BAS/PDC/01333
Codespace
https://data.bas.ac.uk/
Other citation details
Please cite this item as: Newsham, K., Misiak, M., & Worland, M. (2020). Pseudogymnoascus roseus in soil at Mars Oasis, Alexander Island, under different temperature, irrigation and substrate treatments (Version 1.0) [Data set]. UK Polar Data Centre, Natural Environment Research Council, UK Research & Innovation. https://doi.org/10.5285/1cf37889-9f77-41b9-8c49-b175fbd03406
Credit
No credit.
Status
completed Completed
Author
  British Antarctic Survey - Newsham, Kevin K. ( Researcher )
Author
  British Antarctic Survey - Misiak, Marta ( Researcher )
Author
  British Antarctic Survey - Worland, M. Roger ( Researcher )
Point of contact
  NERC EDS UK Polar Data Centre
British Antarctic Survey, High Cross, Madingley Road , Cambridge , Cambridgeshire , CB3 0ET , United Kingdom
+44 (0)1223 221400
https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/
Maintenance and update frequency
asNeeded As needed
Maintenance note
completed Completed
Global Change Master Directory (GCMD) Science Keywords
  • EARTH SCIENCE > Biosphere > Fungi
Theme
  • Mars Oasis
  • Pseudogymnoascus roseus
  • enzyme activity
  • quantitative-PCR
  • snow depth
  • soil decomposer fungus
  • soil warming
  • soil water potential
  • surface soil temperature
Place
  • Alexander Island, Mars Oasis Antarctica
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
Access constraints
otherRestrictions Other restrictions
Other constraints
no limitations to public access
Access constraints
otherRestrictions Other restrictions
Other constraints
no limitations
Use constraints
license License
Other constraints
Open Government Licence v3.0
Use constraints
otherRestrictions Other restrictions
Other constraints
This data is governed by the NERC Data Policy: https://www.ukri.org/who-we-are/nerc/our-policies-and-standards/nerc-data-policy/
Use constraints
otherRestrictions Other restrictions
Other constraints
This data is governed by the NERC data policy and supplied under Open Government Licence v.3
Use constraints
otherRestrictions Other restrictions
Other constraints
We strongly encourage contacting Kevin Newsham (kne@bas.ac.uk ) for more information regarding this dataset, including guidance on its reuse.
Unique resource identifier
url
Codespace
url
Association Type
crossReference Cross reference
Spatial representation type
textTable Text, table
Metadata language
engEnglish
Character set
utf8 UTF8
Topic category
  • Biota
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Begin date
2007-12-01
End date
2018-12-31
Supplemental Information
It is recommended that careful attention be paid to the contents of any data, and that the author be contacted with any questions regarding appropriate use. If you find any errors or omissions, please report them to polardatacentre@bas.ac.uk.
Date (Publication)
2008-11-12
Publisher
  European Petroleum Survey Group
https://www.epsg-registry.org/
Unique resource identifier
urn:ogc:def:crs:EPSG::3031
Version
6.18.3

Distributor

Distributor
  NERC EDS UK Polar Data Centre
British Antarctic Survey, High Cross, Madingley Road , Cambridge , Cambridgeshire , CB3 0ET , United Kingdom
+44 (0)1223 221400
https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/
Name
text/csv
Name
text/plain
Units of distribution
bytes
Transfer size
4750049
OnLine resource
Get Data ( WWW:LINK-1.0-http--link )

Download data

Units of distribution
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Transfer size
4750049
OnLine resource
Get Data ( WWW:LINK-1.0-http--link )

Download data

Hierarchy level
dataset Dataset
Statement

Methodology:

The field experiment was set up in December 2007, at Mars Oasis. 64 circular plots (1 m diameter) were established, half of which were covered with open top chambers. In December 2007, 2009, 2010, 2011 and 2012, each of the 64 plots was assigned to one of four groups (16 plots in each group) and the soil underwent four different treatments: unamended; received glucose; received glycine (amino acid); received powdered tryptic soy broth (mix of amino acids and protein). Half of the chambered and half of the unchambered plots were then raised to 100% water holding capacity. The experimental layout resulted in 16 open top chamber-irrigation-substrate treatment combinations, each replicated four times in a randomised design.

Temperature was monitored in three chambered and three unchambered plots between December 2009 and December 2012. Frozen soil samples were returned to the UK, where water potentials were measured. Laboratory experiments were also undertaken. Three Pseudogymnoascus roseus isolates were obtained from Mars Oasis soil using the soil plate method and identified by sequencing of ribosomal DNA. Quantitative-PCR assays were used to estimate the concentration of Pseudogymnoascus DNA present in soil. The hyphal extension rate analyses were undertaken in the lab, where isolates were grown for 10 weeks on soil extract medium at temperatures cycling daily from 2-18 ° C, 2-21 ° C and 2-24 ° C and at water potentials of -1.06 MPa, -3.60 MPa, -6.00 MPa and -10.80 MPa. At the end of the growth rate experiments, extracellular enzymes were extracted from colonies and the activities of β -1,4-glucosidase (cellulase), N-acetyl- β -glucosaminidase (chitinase), leucine aminopeptidase and alkaline and acid phosphatases were measured using p-nitrophenyl substrates. The impact of temperature cycle and water potential treatments on numbers of P. roseus conidia produced per colony was measured. The treatment effects on conidial germination were also quantified at modified water potentials.

Complete methods can be downloaded with the data via the Get Data link.

Data collection:

Soil temperatures: TinyTag Plus 2 TGP-4017, Gemini Data Loggers Ltd., Chichester, UK

Soil water potentials: WP4C, Decagon Devices, Inc., Pullman, WA, USA

Q-PCR thermocycler: Eco 48 machine, PCRMax Ltd., Witford, UK

Image analysis: ImageJ, National Institute of Health, Bethesda, MD, USA

Plant growth cabinets: MCR-350 Versatile Environmental Test Chamber, Sanyo, Osaka, Japan

Plate reader: Sunrise, TECAN, Austria

Data quality:

Raw data are shown. The data have not been cleaned. Missing data are indicated by NA. There are 1-2 missing data points in the water potential, DNA concentration, conidial density and hyphal extension rate data, caused principally by lack of material or analysis failure. 22 values are missing from the specific enzyme activity data, all of which were caused by analysis failure.

File identifier
1cf37889-9f77-41b9-8c49-b175fbd03406 XML
Metadata language
engEnglish
Character set
utf8 UTF8
Hierarchy level
dataset Dataset
Hierarchy level name
dataset
Date stamp
2020-05-27
Metadata standard name
ISO 19115 Geographic Information - Metadata
Metadata standard version
ISO 19115:2003(E)
Point of contact
  NERC EDS UK Polar Data Centre
British Antarctic Survey, High Cross, Madingley Road , Cambridge , Cambridgeshire , CB3 0ET , United Kingdom
+44 (0)1223 221400
https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/
 
 

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Keywords

Mars Oasis Pseudogymnoascus roseus enzyme activity quantitative-PCR snow depth soil decomposer fungus soil warming soil water potential surface soil temperature
GEMET - INSPIRE themes, version 1.0
Habitats and biotopes
Global Change Master Directory (GCMD) Science Keywords
EARTH SCIENCE > Biosphere > Fungi

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