Antibiotic resistance and resistant genes in Escherichia coli from human, poultry and environmental samples in urban and rural Bangladesh (2017-18)

The dataset includes information on antibiotic-resistance and resistance genes in bacteria (Escherichia coli) from humans, poultry and the environment in rural households, poultry farms and urban food markets. The rural households and poultry farms (broiler chickens) were located in Mirzapur, Tangail district; and urban food markets were located in Dhaka city, Bangladesh. Environmental samples were collected from surface water, water supply, wastewater, soil, animal faeces (poultry and cattle) and solid waste between February 2017 and October 2018 . DNA samples from antibiotic-resistant bacteria found in all samples were analysed for quantitative assessment of two resistance genes. Trained staff from the International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b) undertook sample collection and laboratory analysis. The aim of the study was to assess the prevalence and abundance of antibiotic-resistant bacteria and associated genes among humans, poultry and environmental compartments in Bangladesh. The survey was part of a wider research project, Spatial and Temporal Dynamics of Antimicrobial Resistance Transmission from the Outdoor Environment to Humans in Urban and Rural Bangladesh. The research was funded by NERC/BBSRC/MRC on behalf of the Antimicrobial Resistance Cross-Council Initiative award NE/N019555/1. Full details about this dataset can be found at https://doi.org/10.5285/0239cdaf-deab-4151-8f68-715063eaea45

Identification info

Metadata Language: English (en)

Character set: utf8

Dataset Reference Date (): 2019-02-08

Identifier: https://catalogue.ceh.ac.uk/id/0239cdaf-deab-4151-8f68-715063eaea45

Identifier: doi: / 10.5285/0239cdaf-deab-4151-8f68-715063eaea45

Other citation details: Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B. , Mozmader, T.I.M.A, Hossain M. I., Rahman, M., Wood, P. J. (2019). Antibiotic resistance and resistant genes in Escherichia coli from human, poultry and environmental samples in urban and rural Bangladesh (2017-18). NERC Environmental Information Data Centre 10.5285/0239cdaf-deab-4151-8f68-715063eaea45

NERC EDS Environmental Information Data Centre

NERC Environmental Information Data Centre

Loughborough University - Rousham, E.K.

International Centre for Diarrhoeal Disease Research, Bangladesh - Islam, M.A.

International Centre for Diarrhoeal Disease Research, Bangladesh - Unicomb, L.

International Centre for Diarrhoeal Disease Research, Bangladesh - Asaduzzaman, M.

International Centre for Diarrhoeal Disease Research, Bangladesh - Islam, R.

International Centre for Diarrhoeal Disease Research, Bangladesh - Amin, B.

International Centre for Diarrhoeal Disease Research, Bangladesh - Mozmader, T.I.M.A

International Centre for Diarrhoeal Disease Research, Bangladesh - Hossain M. I.

International Centre for Diarrhoeal Disease Research, Bangladesh - Rahman, M.

Loughborough University - Wood, P. J.

Loughborough University - Rousham, E.K.

Maintenance and update frequency: notPlanned

GEMET - Concepts, version 4.1.3

Keywords

Escherichia coli
bacterial counts
infectious disease
antimicrobial resistance
carbapenem
third-generation cephalosporin

Limitations on Public Access: otherRestrictions

Other constraints: no limitations

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Other constraints: This resource is made available under the terms of the Open Government Licence

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Other constraints: © Loughborough University

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Other constraints: © International Centre for Diarrhoeal Disease Research, Bangladesh

Use constraints: otherRestrictions

Other constraints: If you reuse this data, you should cite: Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B. , Mozmader, T.I.M.A, Hossain M. I., Rahman, M., Wood, P. J. (2019). Antibiotic resistance and resistant genes in Escherichia coli from human, poultry and environmental samples in urban and rural Bangladesh (2017-18). NERC Environmental Information Data Centre https://doi.org/10.5285/0239cdaf-deab-4151-8f68-715063eaea45

Spatial representation type: textTable

Distance: 1 urn:ogc:def:uom:EPSG::9001

Topic category

Health

Begin date: 2017-02-01

End date: 2018-10-31

Code: WGS 84

Distribution Information

Data format

Comma-separated values (CSV) ()

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Resource Locator: Supporting information
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Resource Locator: Supporting information
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Quality Scope: dataset

Other: dataset

Report

Dataset Reference Date (): 2010-12-08

Statement: Samples were collected in the field and transported to the International Centre for Diarrhoeal Disease Research, Bangladesh to undergo laboratory analysis and storage. Field measurements and laboratory results were recorded on paper-based forms or generated from automated readings, entered into Excel then converted to .csv files for ingestion into the Environmental Information Data Centre.

Metadata

File identifier: 0239cdaf-deab-4151-8f68-715063eaea45 XML

Metadata Language: English (en)

Character set: ISO/IEC 8859-1 (also known as Latin 1)

Resource type: dataset

Hierarchy level name: dataset

Metadata Date: 2023-11-06T14:04:38

Metadata standard name: UK GEMINI

Metadata standard version: 2.3

Environmental Information Data Centre

Lancaster Environment Centre, Library Avenue, Bailrigg , Lancaster , LA1 4AP , UK

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